Gene Shew_0009 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0009 
SymbolglyS 
ID4923253 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp9507 
End bp11576 
Gene Length2070 bp 
Protein Length689 aa 
Translation table11 
GC content57% 
IMG OID640161521 
Productglycyl-tRNA synthetase subunit beta 
Protein accessionYP_001092141 
Protein GI127510944 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0751] Glycyl-tRNA synthetase, beta subunit 
TIGRFAM ID[TIGR00211] glycyl-tRNA synthetase, tetrameric type, beta subunit 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00736647 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAATTTG AAAACTTACT CATTGAAGTA GGCACAGAAG AGTTACCGCC AAAATCCCTG 
CGCACCTTAG CCGAATCTTT TCTGGCTAAC TTCGAAGAAG AGCTGCAGAA GGCCGAACTT
AGCTATGAGT CGGCAACCTG GTATGCGGCG CCGCGCCGTC TGGCCCTAAA GGTTAATGCC
CTGGTGACCG CCCAGGCAGA CAAGGTTGTC GAGAAGCGCG GTCCGGCAAT CGCCCAGGCC
TTCGATGCCG ATGGTAACCC AACCAAGGCC GCCATGGGCT GGGCCCGTGG TAACGGCATC
ACGGTAGAAC AGGCCGAGCG TCTTACCACA GACAAGGGCG AATGGTTACT ACACAAGGCC
AAGGTCGTCG GTGTAGAAAC CAAGTCGCTG GTAGCCGAGA TGGCCCAACG CGCCCTGGAC
AAGCTGCCTA TCCCTAAGCC TATGCGTTGG GGCAGCAACA AGACCCAATT TATCCGTCCG
GTACACACAG TCACCATGCT GATGGGCGAC GAGCTGATCC CTGGCGAGCT GCTGGGCATT
GAATCGGCGC GCACCATCCG CGGCCATCGC TTCATGGGTG TCGACACTCT GGAACTGGAT
CATGCCGATA ACTACCTCAC CGCGCTGGAA ACCCAGGGCA AGGTGATGGC CGACTATCAG
GCGCGTATGG CCATCATCAA GGCCGATGCT CAGGCGGCAG CCGACGCCAT GGGCGGCATC
GCCGAGATCG ATGAAGATCT ACTGGAAGAG GTGACCTCTC TGGTCGAGTG GCCGGTAGTG
CTCACCGCCA ACTTCGAAGA AAAATTCCTC GACGTACCGG CCGAAGCCCT GGTTTACACC
ATGAAAGGCG ATCAGAAATA CTTCCCGGTA TTCGACAAGG CGGGCACTCT GCTGCCGCAT
TTCATCTTCG TATCGAATAT CGAATCAAAG GATCCGGCGC AGATCATCGC GGGTAACGAG
AAGGTGGTTC GTCCACGTCT TGCCGACGCC GAATTCTTCT TCGAGACCGA CAAGAAGCAT
AGTCTGGAAT CTCGTCTCGC CAGCCTGGAA ACCGTGGTAT TTCAGCAGCA GCTTGGTACC
ATCAAAGACA GAGTCGAGCG CATCTCTGCC CTCGCTGCCT TCATTGCCCA AGGCATTGGC
GCCGACAGCG AGCAGGCAGG CCGCGCCGGT CTACTCTCTA AGTCAGATCT CATGACCAAC
ATGGTGATGG AATTTACCGA TCTACAGGGC ACCATGGGCA TGCACTATGC GCGCCTGGAC
GGTGAAACCG AGGCGGTTGC CCTTGCCCTC GAAGAGCAGT ACAAGCCTAA GTTCTCAGGC
GACAGCGTAC CGACTCAGCC TATCTCTATC TCGGTCGCAC TGGCGGAGAA ACTCGATACC
TTAGTGGGTA TCTTCGGCAT AGGTCAGGCA CCAAAAGGTG CGGCGGATCC TTTCGCCCTG
CGCCGCGCGG CTATCGGTAT CCTGCGTATC TGTGTCGAAA ACAACTTGCC ACTCGACCTG
GTCGATCTGG TTGCCAAGGC ACAGGAGCTT CATGGTGCTA ACCTGAGCAA CGCCGACACC
GCAGAGCAAG TACTGGAATT CCTGATGGGC CGTTTCCGCG CCTGGTATCA AGATCAAGGC
ATCAGCGTCG ATGTGATCCT GGCGGTACTG GCACGTCGTC CAACCTCGCC AGCCGATTTT
GACAGCCGCA TCAAGGCAGT TACCCACTTC AGAAGCCTGG AGCAGGCCGC AGCACTGGCC
GCAGCCAACA AGCGTGTGTC GAACATTCTG GCCAAGGTCG AAGGCGATAT CGCCAGCGAT
ATCGACAGCA ACCTGCTACA AGAGAGCGCC GAACAGGCAC TGGCCAGCAA GCTAAACGAG
CTGCAGCCAC AACTGGAGCC GCTGTTTGCC AACGCAGACT ACCAACAGGC ACTGGCCTTG
CTGGCCAGCC TGCGTGAAAG CGTCGACACC TTCTTCGAAG ATGTGATGGT GATGGCCGAC
GACGAGGCCC TCAAGCAGAA CCGTCTGGCG CTGCTGTCTA AGCTCAGAGC CCAGTTCCTG
CACGCCGCCG ATATCTCGCT GCTGCAATAA
 
Protein sequence
MKFENLLIEV GTEELPPKSL RTLAESFLAN FEEELQKAEL SYESATWYAA PRRLALKVNA 
LVTAQADKVV EKRGPAIAQA FDADGNPTKA AMGWARGNGI TVEQAERLTT DKGEWLLHKA
KVVGVETKSL VAEMAQRALD KLPIPKPMRW GSNKTQFIRP VHTVTMLMGD ELIPGELLGI
ESARTIRGHR FMGVDTLELD HADNYLTALE TQGKVMADYQ ARMAIIKADA QAAADAMGGI
AEIDEDLLEE VTSLVEWPVV LTANFEEKFL DVPAEALVYT MKGDQKYFPV FDKAGTLLPH
FIFVSNIESK DPAQIIAGNE KVVRPRLADA EFFFETDKKH SLESRLASLE TVVFQQQLGT
IKDRVERISA LAAFIAQGIG ADSEQAGRAG LLSKSDLMTN MVMEFTDLQG TMGMHYARLD
GETEAVALAL EEQYKPKFSG DSVPTQPISI SVALAEKLDT LVGIFGIGQA PKGAADPFAL
RRAAIGILRI CVENNLPLDL VDLVAKAQEL HGANLSNADT AEQVLEFLMG RFRAWYQDQG
ISVDVILAVL ARRPTSPADF DSRIKAVTHF RSLEQAAALA AANKRVSNIL AKVEGDIASD
IDSNLLQESA EQALASKLNE LQPQLEPLFA NADYQQALAL LASLRESVDT FFEDVMVMAD
DEALKQNRLA LLSKLRAQFL HAADISLLQ