Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0009 |
Symbol | glyS |
ID | 4923253 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 9507 |
End bp | 11576 |
Gene Length | 2070 bp |
Protein Length | 689 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640161521 |
Product | glycyl-tRNA synthetase subunit beta |
Protein accession | YP_001092141 |
Protein GI | 127510944 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0751] Glycyl-tRNA synthetase, beta subunit |
TIGRFAM ID | [TIGR00211] glycyl-tRNA synthetase, tetrameric type, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00736647 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAATTTG AAAACTTACT CATTGAAGTA GGCACAGAAG AGTTACCGCC AAAATCCCTG CGCACCTTAG CCGAATCTTT TCTGGCTAAC TTCGAAGAAG AGCTGCAGAA GGCCGAACTT AGCTATGAGT CGGCAACCTG GTATGCGGCG CCGCGCCGTC TGGCCCTAAA GGTTAATGCC CTGGTGACCG CCCAGGCAGA CAAGGTTGTC GAGAAGCGCG GTCCGGCAAT CGCCCAGGCC TTCGATGCCG ATGGTAACCC AACCAAGGCC GCCATGGGCT GGGCCCGTGG TAACGGCATC ACGGTAGAAC AGGCCGAGCG TCTTACCACA GACAAGGGCG AATGGTTACT ACACAAGGCC AAGGTCGTCG GTGTAGAAAC CAAGTCGCTG GTAGCCGAGA TGGCCCAACG CGCCCTGGAC AAGCTGCCTA TCCCTAAGCC TATGCGTTGG GGCAGCAACA AGACCCAATT TATCCGTCCG GTACACACAG TCACCATGCT GATGGGCGAC GAGCTGATCC CTGGCGAGCT GCTGGGCATT GAATCGGCGC GCACCATCCG CGGCCATCGC TTCATGGGTG TCGACACTCT GGAACTGGAT CATGCCGATA ACTACCTCAC CGCGCTGGAA ACCCAGGGCA AGGTGATGGC CGACTATCAG GCGCGTATGG CCATCATCAA GGCCGATGCT CAGGCGGCAG CCGACGCCAT GGGCGGCATC GCCGAGATCG ATGAAGATCT ACTGGAAGAG GTGACCTCTC TGGTCGAGTG GCCGGTAGTG CTCACCGCCA ACTTCGAAGA AAAATTCCTC GACGTACCGG CCGAAGCCCT GGTTTACACC ATGAAAGGCG ATCAGAAATA CTTCCCGGTA TTCGACAAGG CGGGCACTCT GCTGCCGCAT TTCATCTTCG TATCGAATAT CGAATCAAAG GATCCGGCGC AGATCATCGC GGGTAACGAG AAGGTGGTTC GTCCACGTCT TGCCGACGCC GAATTCTTCT TCGAGACCGA CAAGAAGCAT AGTCTGGAAT CTCGTCTCGC CAGCCTGGAA ACCGTGGTAT TTCAGCAGCA GCTTGGTACC ATCAAAGACA GAGTCGAGCG CATCTCTGCC CTCGCTGCCT TCATTGCCCA AGGCATTGGC GCCGACAGCG AGCAGGCAGG CCGCGCCGGT CTACTCTCTA AGTCAGATCT CATGACCAAC ATGGTGATGG AATTTACCGA TCTACAGGGC ACCATGGGCA TGCACTATGC GCGCCTGGAC GGTGAAACCG AGGCGGTTGC CCTTGCCCTC GAAGAGCAGT ACAAGCCTAA GTTCTCAGGC GACAGCGTAC CGACTCAGCC TATCTCTATC TCGGTCGCAC TGGCGGAGAA ACTCGATACC TTAGTGGGTA TCTTCGGCAT AGGTCAGGCA CCAAAAGGTG CGGCGGATCC TTTCGCCCTG CGCCGCGCGG CTATCGGTAT CCTGCGTATC TGTGTCGAAA ACAACTTGCC ACTCGACCTG GTCGATCTGG TTGCCAAGGC ACAGGAGCTT CATGGTGCTA ACCTGAGCAA CGCCGACACC GCAGAGCAAG TACTGGAATT CCTGATGGGC CGTTTCCGCG CCTGGTATCA AGATCAAGGC ATCAGCGTCG ATGTGATCCT GGCGGTACTG GCACGTCGTC CAACCTCGCC AGCCGATTTT GACAGCCGCA TCAAGGCAGT TACCCACTTC AGAAGCCTGG AGCAGGCCGC AGCACTGGCC GCAGCCAACA AGCGTGTGTC GAACATTCTG GCCAAGGTCG AAGGCGATAT CGCCAGCGAT ATCGACAGCA ACCTGCTACA AGAGAGCGCC GAACAGGCAC TGGCCAGCAA GCTAAACGAG CTGCAGCCAC AACTGGAGCC GCTGTTTGCC AACGCAGACT ACCAACAGGC ACTGGCCTTG CTGGCCAGCC TGCGTGAAAG CGTCGACACC TTCTTCGAAG ATGTGATGGT GATGGCCGAC GACGAGGCCC TCAAGCAGAA CCGTCTGGCG CTGCTGTCTA AGCTCAGAGC CCAGTTCCTG CACGCCGCCG ATATCTCGCT GCTGCAATAA
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Protein sequence | MKFENLLIEV GTEELPPKSL RTLAESFLAN FEEELQKAEL SYESATWYAA PRRLALKVNA LVTAQADKVV EKRGPAIAQA FDADGNPTKA AMGWARGNGI TVEQAERLTT DKGEWLLHKA KVVGVETKSL VAEMAQRALD KLPIPKPMRW GSNKTQFIRP VHTVTMLMGD ELIPGELLGI ESARTIRGHR FMGVDTLELD HADNYLTALE TQGKVMADYQ ARMAIIKADA QAAADAMGGI AEIDEDLLEE VTSLVEWPVV LTANFEEKFL DVPAEALVYT MKGDQKYFPV FDKAGTLLPH FIFVSNIESK DPAQIIAGNE KVVRPRLADA EFFFETDKKH SLESRLASLE TVVFQQQLGT IKDRVERISA LAAFIAQGIG ADSEQAGRAG LLSKSDLMTN MVMEFTDLQG TMGMHYARLD GETEAVALAL EEQYKPKFSG DSVPTQPISI SVALAEKLDT LVGIFGIGQA PKGAADPFAL RRAAIGILRI CVENNLPLDL VDLVAKAQEL HGANLSNADT AEQVLEFLMG RFRAWYQDQG ISVDVILAVL ARRPTSPADF DSRIKAVTHF RSLEQAAALA AANKRVSNIL AKVEGDIASD IDSNLLQESA EQALASKLNE LQPQLEPLFA NADYQQALAL LASLRESVDT FFEDVMVMAD DEALKQNRLA LLSKLRAQFL HAADISLLQ
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