| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0008 |
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| Symbol | |
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| ID | 4922900 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 8722 |
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| End bp | 9408 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640161520 |
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| Product | allophanate hydrolase subunit 1 |
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| Protein accession | YP_001092140 |
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| Protein GI | 127510943 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2049] Allophanate hydrolase subunit 1 |
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| TIGRFAM ID | [TIGR00370] conserved hypothetical protein TIGR00370 |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00137026 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATGAGAG ACAGTCATAG GTTTATCCCC TCTTTGCAGA TCAATATCTA TCCCCTGGGC
GAGCGCGCCC TGGTACTCGA TCCCTCGCCC GAGGCCACAC TCTCTTGGGC CGTGCAGTCT
AAGCTGTGCT GGATCGCCGA GCAGCTACGC CAGTTCCCCA TAGTCGAAGA GGCTATCCCC
GGCATGAACA ACCTGACCAT AGTTGTCAGA GAGACCAGGC AGTTAAAGGC CATGCAGGCG
AGACTGGCTG AACTGTGGCA GAGCGCACCC GCCGAGACAC GTGAGAGTCG CACCATAGAG
ATCCCGGTGA GTTATGGCGG TGACGCGGGG CCGGATCTGC TCTCTGTGGC TCAGTTCCAT
CACCTCAGCC CAGAAGAAGT GGTCAAGCTT CACAGCCAGG CCTGCTATCA GGTGTTCTTC
ATCGGCTTTC AACCAGGGTT TGCCTACCTC GAAGGCCTGC CCAAGCACTT ACACACGCCC
AGGCTGGCGA CCCCGAGATT AACCATTCCC GCAGGCAGCG TTGGCATAGG CGGCGAGCAG
ACGGGTATCT ACCCACTGAC GAGCCCGAGT GGCTGGCAGA TCATAGGGCA AACCCAGCTA
GCACTATTCG ATCCCACCAG CGATACCCTA TGCCTGCTCA AGCCAGGCGA CAGGGTACGG
TTCATCCCTG TGGAGATAGC GCTATGA
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| Protein sequence | MMRDSHRFIP SLQINIYPLG ERALVLDPSP EATLSWAVQS KLCWIAEQLR QFPIVEEAIP
GMNNLTIVVR ETRQLKAMQA RLAELWQSAP AETRESRTIE IPVSYGGDAG PDLLSVAQFH
HLSPEEVVKL HSQACYQVFF IGFQPGFAYL EGLPKHLHTP RLATPRLTIP AGSVGIGGEQ
TGIYPLTSPS GWQIIGQTQL ALFDPTSDTL CLLKPGDRVR FIPVEIAL
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