| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0005 |
|---|
| Symbol | |
|---|
| ID | 4923546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 6322 |
|---|
| End bp | 7041 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640161517 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001092137 |
|---|
| Protein GI | 127510940 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000288418 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGG CTTATCTTGC CGCGCTGTCT ATCTTGTTAC TTGCCTTAGG CTTCGGTCTG
TTCCTTAGTC ATACAGATAC AGGGGCCGTG GTGGAGCAAG GTGCGATGCA GGAGCTGGTA
AAACATCTGC AAGCACAGGA TGAAGCCGAC ATTAAGGCAG CTATCGTAGA CAATCAGCCT
CCATTAGAAC AGGACTCAAA GATCAGCCTG TCAAACGGTC AGCCTGATGC TGATTTAGCA
TCGGCAGACC AGCAGAATAG TTCGACAAGG TCCGCTCCTT TATCCTCTTA CCGAGTAACG
CCCTCTCAGG CTGAATATGC CAGCTTAATG GATCTGTACC TAGCAGCCGA GGGCCCTTTC
ATGCGAGAGG GGACCGCCTA CTTCTACGTT GCCAATCTGC AAGAGCCCTA TTTCTTGGCA
TCTCCCCCTG AGCTTAACGA TTTAATGGCT AACGATACCG ACCAATACAT AGAGCTTAAG
GTCGAGGAGT TTAACCAGAT TGATGAGGCC TACGGCGACA ATTGGGGTGG TGACTTTACC
GAGTTAGTTG TGAATTATCA CTATTGCAAG CAGAGTCGCT GTCTGCTGCG AGCGAGTCAT
GAGTCGGTAA CCTTTCTTCG CGATTATGTC GCCCGCTATG AGCAGAGTCA TCCGGAGTTA
GAGGTCGATA GTATGACAAC AGCTGCTGGC GATCTGCTGC TGATTTATCG CCGACGCTAA
|
|---|
| Protein sequence | MKKAYLAALS ILLLALGFGL FLSHTDTGAV VEQGAMQELV KHLQAQDEAD IKAAIVDNQP
PLEQDSKISL SNGQPDADLA SADQQNSSTR SAPLSSYRVT PSQAEYASLM DLYLAAEGPF
MREGTAYFYV ANLQEPYFLA SPPELNDLMA NDTDQYIELK VEEFNQIDEA YGDNWGGDFT
ELVVNYHYCK QSRCLLRASH ESVTFLRDYV ARYEQSHPEL EVDSMTTAAG DLLLIYRRR
|
|---|
| |