| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0004 |
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| Symbol | |
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| ID | 4921660 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3783 |
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| End bp | 6200 |
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| Gene Length | 2418 bp |
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| Protein Length | 805 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640161516 |
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| Product | DNA gyrase, B subunit |
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| Protein accession | YP_001092136 |
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| Protein GI | 127510939 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.279894 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000731139 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCAGAGA ATAGTTACGA TTCTTCGAGT ATTAAGGTAC TAAAGGGCCT TGATGCGGTA
CGGAAGAGAC CTGGGATGTA TATTGGTGAC ACCGACGACG GTACGGGTCT GCATCACATG
GTGTTCGAAG TGGTCGATAA CTCTATCGAT GAGGCGTTAG CGGGTTACTG TAATGACGTG
ATCATTACTA TCCATGCCGA CGGTTCGGTA TCGGTAAAGG ATGACGGACG TGGTATTCCT
GTTGCTATCC ACCCAGAAGA GGGGGTATCG GCGGCTCAGG TTATTATGAC GGTACTGCAC
GCCGGCGGTA AGTTCGACGA TAACTCTTAT AAAGTATCTG GTGGTCTGCA CGGCGTGGGT
GTTTCTGTGG TTAACGCCCT GTCTGAGAAG CTTAAGCTGA CCATTCGCCG TGACGGCAAA
CTGTATGAAC AGTTCTACAC CATGGGTGAG CCCGATGCGC CTATCGCCGA GATAGGCGAT
GCCACCAACA CAGGTACTGA GATCCGTTTC TGGCCAAGCG CCGAGACTTT CTCGGACACT
CTTTTCCATT TCGATATTCT GGCTAAGCGT GTTCGCGAGC TGTCATTCCT TAACTCGGGC
GTAGGTATTC GCCTAATCGA CGAGCGCGAC AACAAGGATG AGTTTTTCAA GTATGAAGGC
GGTATTAGTG CATTCGTCGA TTACCTCAAC CTTAACAAGA CCCCGGTCAA CAAAGAGATC
TTCCACTTCG TGCAGGAGCG TGAAGACGGT ATCACAGTAG AAGTGGCGAT GCAGTGGAAC
GATGGTTTCC AGGAAAACAT CTTCTGTTTC ACCAACAACA TTCCTCAGCG CGATGGTGGT
ACTCACCTTG CTGGTTTCCG TGCTGCCTTA ACCCGTAACC TCAACAGTTA CATGGACAAG
GAAGGCTTTA ACAAGAAAGG CAAGACCTCT GCTACCGGCG ATGATGCCCG TGAAGGCCTG
ACCGCCGTGA TCTCGGTTAA GGTGCCGGAT CCTAAGTTCA GCTCTCAGAC CAAAGACAAG
CTGGTATCGA GCGAAGTGAA GTCGGCCGTT GAGCAGACCA TGGGCGAGAA GTTGGGTGAC
TACCTGCTGG AGAATCCTAA CGAAGCCAAG CTTATCGTTG GTAAGATCAT CGATGCGGCC
CGTGCCCGTG AAGCGGCGCG TAAGGCCCGT GAGATGACCC GTCGTAAAGG CGCATTAGAT
TTAGGTGGTC TGCCAGGTAA GTTGGCGGAT TGCCAGGAGA AAGACCCAGC GCTTTCTGAA
ATTTACATAG TGGAGGGTGA CTCTGCGGGT GGTAGTGCCA AGCAGGGTCG TAACCGTAAG
AACCAGGCTA TTCTGCCGCT TAAGGGTAAG ATCCTTAACG TTGAGAAGGC CCGTTTCGAC
AAGATGCTCT CTTCACAGGA AGTAGCGACC CTGATCACCG CCCTGGGCTG TGGTATCGGC
CGCGACGAGT ATGATCCCGA TAAGACCCGT TATCACAACA TTGTCATCAT GACAGATGCT
GACGTCGACG GCTCGCACAT TCGTACCTTG CTGTTGACCT TCTTCTTCCG TCAAATGCCA
GAGCTTATCG AGCGTGGCTA TGTATTTATC GCCCAGCCGC CACTGTACAA GGTGAAGAAG
GGTAAGCAGG AGCAGTACCT GAAAGATGAT CCGGCGCTGA CCGAATACCT GACTAACCTG
GCCCTGGACG GTGGTGAGAT CCATCCGTCT CAAGACGCAC CGGCCATGTC TGGCGCGCCG
CTAGAGAAAT TGGTGTACCA GTACCGTGAA GTGGAAGCGA TTTTCGATCG TCTCGAGCAG
CGTTTCCCTA TCATGTTGAC CGAGCGCATG CTGTATCAGC CTGGCTTGAG CAACGATATC
CTGGCCGACG AAGCCAAGGT GAAACAGTGG TGCGACAACT ATGTGGCAGC CCTGACCGAA
GCAGAATCGG GTGGCTTCAT CTTCAGCGCC GAGGCTTTCC TCGACCCAGA GCGTCAGGTC
TATCTGCCTA AGGTGACGGT ACGTAAGCAT GGTATCGATA CCCACTACCT GTTCTCTTAC
GACTTCCTGC AGTCGAGCGA CTACCAGCGT ATGACGGCCT TGGCCGAAGC GCTTGAAGGC
CTGATCGAAG AGGGCGGTTA TGTGAAGCGT GGCGAGCGCA TGAAGGAAAT TTCTTCATTC
GTAGACGCCC TGGATTGGCT GATGAACGAC TCTAAGCGTG GCCTCTACAT CCAGCGCTAC
AAAGGATTGG GTGAGATGAA CCCTGAGCAG CTATGGGAAA CCACCATGGA TCCTGAGTCG
CGTCGCATGC TGAAGGTGAC CATCGAAGAT GCCATCGCCG CCGACCAACT GTTTACCTGT
CTGATGGGTG ATCAGGTTGA GCCGCGTCGT GACTTCATCG AGTCTAATGC CCTCAACGTG
GCCAACCTCG ACGTATAA
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| Protein sequence | MSENSYDSSS IKVLKGLDAV RKRPGMYIGD TDDGTGLHHM VFEVVDNSID EALAGYCNDV
IITIHADGSV SVKDDGRGIP VAIHPEEGVS AAQVIMTVLH AGGKFDDNSY KVSGGLHGVG
VSVVNALSEK LKLTIRRDGK LYEQFYTMGE PDAPIAEIGD ATNTGTEIRF WPSAETFSDT
LFHFDILAKR VRELSFLNSG VGIRLIDERD NKDEFFKYEG GISAFVDYLN LNKTPVNKEI
FHFVQEREDG ITVEVAMQWN DGFQENIFCF TNNIPQRDGG THLAGFRAAL TRNLNSYMDK
EGFNKKGKTS ATGDDAREGL TAVISVKVPD PKFSSQTKDK LVSSEVKSAV EQTMGEKLGD
YLLENPNEAK LIVGKIIDAA RAREAARKAR EMTRRKGALD LGGLPGKLAD CQEKDPALSE
IYIVEGDSAG GSAKQGRNRK NQAILPLKGK ILNVEKARFD KMLSSQEVAT LITALGCGIG
RDEYDPDKTR YHNIVIMTDA DVDGSHIRTL LLTFFFRQMP ELIERGYVFI AQPPLYKVKK
GKQEQYLKDD PALTEYLTNL ALDGGEIHPS QDAPAMSGAP LEKLVYQYRE VEAIFDRLEQ
RFPIMLTERM LYQPGLSNDI LADEAKVKQW CDNYVAALTE AESGGFIFSA EAFLDPERQV
YLPKVTVRKH GIDTHYLFSY DFLQSSDYQR MTALAEALEG LIEEGGYVKR GERMKEISSF
VDALDWLMND SKRGLYIQRY KGLGEMNPEQ LWETTMDPES RRMLKVTIED AIAADQLFTC
LMGDQVEPRR DFIESNALNV ANLDV
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