Gene P9301_17981 details

Gene Information

• Locus tag: P9301_17981
• Symbol: rimM
• ID: 4911547
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. MIT 9301
• Kingdom: Bacteria
• Replicon accession: NC_009091
• Strand: +
• Start bp: 1519685
• End bp: 1520224
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 28%
• IMG OID: 640161402
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_001092022
• Protein GI: 126697136
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.581865
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATAAATA AAAATGAATG GTTGACTGTT GGATTGATAA CATCATGTCA TGGAATTAAT 
GGACAGGTAA AGGTTAAATC TCTAAGTGAT TTTGAAGAAA GATTTTTAAA ACCTGGAATG 
CGATGGTTGC AAAAAGAAAA TGAACCCCCT TCAAAAATAG AACTTATATC TGGTTTCAAA 
CAGCCTGGTA AAGAAACCTT CATAGTTAAG TTACAAGGAA TAAATACAAG AAATGATGCA 
GAGCAACTGA AAACATTTAA AATTCTCGTA AGAACTGACA AACTACCCAA ATTAAAAAAG 
GAAGAATTTC ACTTGTTAGA ACTAATAAAT CTCGAGGTCA AGACTTTAGA AAACGATGAA 
TTAAAAACAA TTGGGAAAGT TATCAATTTA GAAAATGAGA AAAATAATTT ACTTATTATT 
GAACTATTTA AAAATCAAAA AAAAGTTCTA ATACCATTTG TAAAAGAAAT CGTGCCATTA 
GTAGATATAA AAAATCAATT TGTAATCATC AATCCTCCAA ATGGACTTTT AGAGCTTTAA 

 

Protein sequence

MINKNEWLTV GLITSCHGIN GQVKVKSLSD FEERFLKPGM RWLQKENEPP SKIELISGFK 
QPGKETFIVK LQGINTRNDA EQLKTFKILV RTDKLPKLKK EEFHLLELIN LEVKTLENDE 
LKTIGKVINL ENEKNNLLII ELFKNQKKVL IPFVKEIVPL VDIKNQFVII NPPNGLLEL