| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9301_17571 |
|---|
| Symbol | |
|---|
| ID | 4912055 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9301 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009091 |
|---|
| Strand | - |
|---|
| Start bp | 1478752 |
|---|
| End bp | 1480257 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 640161357 |
|---|
| Product | phytoene dehydrogenase and related protein |
|---|
| Protein accession | YP_001091981 |
|---|
| Protein GI | 126697095 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
|---|
| TIGRFAM ID | [TIGR02733] C-3',4' desaturase CrtD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.274386 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAATT CCGAAGTTAT TGTTGTTGGC GCGGGTATAG CAGGATTAAC TTCTGCTGCG
ATTTTATCAA AACAAGGTTT ATCAGTTAAT TTAATCGAAT CTCATACTCA ATCAGGAGGA
TGTGCAGGTA CTTTCAAAAG AAAAAATTAT ATTTTTGATG TTGGTGCAAC TCAAGTTGCG
GGTTTAGAGA AAGGAGGAAT ACATTCGAGA ATTTTTAATT TTTTAGATAT TCCATCTCCT
GAAGCGACAA TTTTAGATCC TGCTTGCATA GTTGATTTAA ATGATGGAGG TAAGCCCATA
CCTATTTGGT ATGAAAAAAG TAAATGGATT GCTGAACAAG AAATGCAGTT TCCAGGGAGT
GGTAAATTTT GGAAGCTTTG TGCTCTCATT CATCAAAGTA ATTGGATATT TGCCAACAAT
AATCCTGTAT TACCAGTAAG TAATTTTTGG GATTTTTCTC AACTTCTTAA AGCACTAGTA
CCGTCGAATC TCGTCACAGG TATCTTACTA AAATCAACTA TTTTTGATTT GTTGCGAATA
TGTGGATTAT CCAATAATGA GCGCTTGATA AAATTCTTAA ATCTTCAATT AAAACTTTAT
TCTCAAGAGG ACGTTCATAA TACAGCCGCA TTATATGGAT CTACTGTTCT TCAAATGTGT
CAACAGCCAC ATGGTCTGTG GCATCTTAAA AAATCTATGC AGTCTTTAAG TGAATCATTA
GAAAGTTCAT TGAGGAAAAC TGAAGCTAAT CTAATTTTTG GACAAAAAGT TAATTCTATA
AATTTTGATG AGGAAAATAT GTGTTGGAAA GTATCTGCTA ATTCGAAAAA AAAATCTTTT
ATTTACCAAG CAAAAGATTT GATTTATACC GCGCCTCCAC AATCTTTGCT CAATCATTTG
AAAGATCCTT TAAAAAGAAA AAAGAAGTAT CAAAATCGAA TCAATAATTT GCCTGATCCA
AGTGGAGCTG TAGTTTTTTA TTCAGCATTA AAAAGAGAAC ATATTAAAAA AACTTTCTCC
AATCATTATC AATTTGTGTC CAAAGAATTT ACTTCGGTAT TTGTATCTAT TAGTGATGAT
GGTGATGGAA GAGCACCTAA TGGTGAGGTT ACTTTAATCG CGAGTATCTT TACCAAGACT
AAAAATTGGT TTGATCTAGA TAAACAAACT TATTTAAAAA AGAAAAATGA TTTCATGAAA
AAATTATCGC TTGAATTGGA AAGTCAATTT GATATTGATC CTGAAAATTG GCTACATAGG
GAATTAGCAA CTCCATTGGG ATTTGAAAAA TGGACAAATA GACCTAATGG AATAGTAGGT
GGGCTTGGCC AGAATCCTGA TATTTTTGGT TTATTTGGAC TATCAAGTAG GACACCTTTT
GAAGGTTTAT GGCTATGTGG AGATTCGATT TATCCTGGAG AGGGCACTGC AGGTGTTAGT
CAGTCTGCAT TAATGGTTTC AAGGCAAATT TTAGCTTCTA GAGGTATAAA AAATTTTAGT
TTATAA
|
|---|
| Protein sequence | MRNSEVIVVG AGIAGLTSAA ILSKQGLSVN LIESHTQSGG CAGTFKRKNY IFDVGATQVA
GLEKGGIHSR IFNFLDIPSP EATILDPACI VDLNDGGKPI PIWYEKSKWI AEQEMQFPGS
GKFWKLCALI HQSNWIFANN NPVLPVSNFW DFSQLLKALV PSNLVTGILL KSTIFDLLRI
CGLSNNERLI KFLNLQLKLY SQEDVHNTAA LYGSTVLQMC QQPHGLWHLK KSMQSLSESL
ESSLRKTEAN LIFGQKVNSI NFDEENMCWK VSANSKKKSF IYQAKDLIYT APPQSLLNHL
KDPLKRKKKY QNRINNLPDP SGAVVFYSAL KREHIKKTFS NHYQFVSKEF TSVFVSISDD
GDGRAPNGEV TLIASIFTKT KNWFDLDKQT YLKKKNDFMK KLSLELESQF DIDPENWLHR
ELATPLGFEK WTNRPNGIVG GLGQNPDIFG LFGLSSRTPF EGLWLCGDSI YPGEGTAGVS
QSALMVSRQI LASRGIKNFS L
|
|---|
| |