Gene P9301_16761 details

Gene Information

• Locus tag: P9301_16761
• Symbol: rpoB
• ID: 4912530
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. MIT 9301
• Kingdom: Bacteria
• Replicon accession: NC_009091
• Strand: -
• Start bp: 1405972
• End bp: 1409265
• Gene Length: 3294 bp
• Protein Length: 1097 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 640161273
• Product: DNA-directed RNA polymerase subunit beta
• Protein accession: YP_001091900
• Protein GI: 126697014
• COG category: [K] Transcription
• COG ID: [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit
• TIGRFAM ID: [TIGR02013] DNA-directed RNA polymerase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAGTA GCGCTTTACA GGTAGCAAAA ACAGCTACTT ATCTACCAGA TTTAGTTGAA 
GTACAAAGAG CAAGCTTTAA ATGGTTTTTG GAAAAGGGTT TAATAGAAGA ATTACAAAAT 
TTTTCTCCAA TTTCTGATTA CACAGGTAAA TTAGAATTAC ATTTCATCGG TGAAGAGTAC 
AGGTTAAAAA GACCTAGACA TGATGTTGAG GAAGCTAAAA GAAGAGATGC TACATTTGCA 
TCTCAAATGT ATGTAACTTG CAGGTTAATT AATAAAGAGA CAGGGGAAAT TAAAGAACAA 
GAAGTATTTA TTGGCGAACT ACCATTAATG ACTGAAAGAG GAACTTTCAT TATTAATGGT 
GCTGAAAGAG TTATTGTTAA TCAAATTGTT CGAAGTCCCG GTGTATATTT CAAAGATGAA 
CTTGATAAAA ATGGTCGAAG GACCTACAAC GCTAGCGTTA TTCCTAATAG AGGTGCTTGG 
TTAAAATTCG AAACTGACAA AAATAATTTA CTTTATGTGA GAGTTGACAA AACTAGAAAA 
ATTAATGCTC ATGTTCTTAT GAGAGCGATG GGCCTTTCAG ATAATGATGT GGTCGATAAA 
CTAAGGCATC CTGAGTTTTA TCAAAGCTCC ATTGAGTCAG CTAATGACGA GGGTATAAAT 
TCAGAAGACC AGGCATTACT TGAGCTATAC AAGAAGCTAC GTCCTGGTGA ACCTCCCTCT 
GTTTCAGGCG GACAACAACT GTTACACAGT AGGTTTTTCG ATCCAAAAAG ATATGATTTA 
GGACGAGTTG GTAGATATAA AATAAACAAA AAATTGAGAC TAACCGTACC AGACAATGTG 
AGAACACTTA CCCATGAAGA TGTCCTCTCT ACCATTGATT ATTTAATTAA TCTAGAATTG 
GACATTGGCG GCGCTAGTTT AGATGATATC GATCACCTTG GTAATCGGAG GGTTAGATCT 
GTAGGAGAAC TTTTACAAAA TCAAGTCAGG GTTGGACTCA ATCGCTTAGA GAGAATTATT 
AAAGAGAGAA TGACTGTAGG AGAGACAGAT TCTTTAACTC CTGCTCAACT AGTAAATCCC 
AAACCTTTAG TTGCTGCTAT AAAGGAATTT TTTGGATCCA GTCAATTAAG CCAGTTCATG 
GATCAAACTA ATCCTCTGGC TGAATTAACA CACAAGAGAA GAATTTCAGC ATTAGGTCCA 
GGTGGTTTAA CTAGAGAAAG AGCAGGCTTT GCAGTAAGAG ATATACACCC TTCGCATTAT 
GGAAGATTAT GTCCTATCGA GACTCCCGAA GGTCCTAATG CAGGACTTAT AAATTCTTTA 
GCTACCCATG CAAGAGTTAA TGAATATGGT TTCATTGAAA CACCTTTTTG GGAAGTCAAA 
AACGGTAAAG TGGATAAAGA AGGTAATCCT GTTTATCTTT CTGCTGATTT AGAAGATGAG 
TGTAGGGTGG CTCCAGGAGA CGTCGCAACT GACAAGGACG GAAACATAAT TGCAAATCTA 
ATACCAGTAA GATATCGACA AGATTTTGAA AAAGTTCCAC CTCATCAAGT TGATTACGTT 
CAGCTTTCTC CGGTTCAGGT GATTTCAGTT GCTACTTCAC TTATTCCTTT CTTGGAACAT 
GATGATGCTA ATAGAGCTCT AATGGGATCA AATATGCAAC GCCAAGCCGT TCCACTGCTC 
AGGCCAGAAC GTCCTTTAGT TGGTACAGGT TTAGAATCTC AAGTTGCTAG AGATTCCGGG 
ATGGTTCCCA TCACAAAAGT TAATGGAACT GTATCTTACG TAGATGCTAA TGAGATTGTC 
GTCAAAGATG AGGATGGTAA TGAACATTTT CACTATCTAC AGAAATATCA AAGATCAAAT 
CAAGATACTT GCCTCAACCA AAGACCTATA GTGAAAATTG GAGATAGAGT TATATCTGGT 
CAAGTTTTAG CAGATGGATC TGCATGTGAA GGAGGGGAAA TTGCCCTTGG CCAAAACGTT 
TTAATTGCTT ATATGCCATG GGAGGGGTAC AACTACGAGG ATGCAATTCT TGTGAGTGAG 
AGGATGGTTA CTGATGATTT ATATACTTCA GTGCATATTG AAAAATATGA AATTGAAGCA 
AGACAAACGA AGTTAGGGCC TGAAGAGATA ACGAGAGAGA TTCCTAATAT TTCGGAAGAA 
AGCTTGAATA ATCTTGATGA GATGGGAATT ATTAGGATTG GTGCTTTTGT AGAGAGTGGA 
GATATCCTTG TAGGAAAAGT GACTCCAAAA GGGGAATCAG ACCAACCACC GGAAGAAAAA 
CTGTTAAGAG CCATTTTCGG TGAAAAAGCT AGAGATGTGA GAGACAATTC CCTCAGAGTA 
CCTAAAACTG AAAAGGGAAG GGTTTTGGAT GTTCGTATTT ATACAAGAGA ACAAGGTGAT 
GAATTACCTC CAGGAGCCAA TATGGTTGTG AGGGTTTATG TTGCCCAGAG AAGAAAAATT 
CAAGTAGGTG ACAAAATGGC CGGGAGGCAT GGAAATAAAG GAATTATTAG CAGAATCTTA 
CCAAGAGAAG ATATGCCTTA TTTACCTGAT GGAACCCCTG TAGATATAGT GCTTAATCCT 
TTAGGAGTTC CAAGTAGGAT GAATGTTGGT CAAGTTTTTG AATTACTTAT GGGCTGGGCA 
GCTGCCAATT TAAATTGCCG GGTTAAAGTC GTTCCATTTG ATGAAATGTA TGGAGCTGAA 
AAGTCACATC AAACTGTTCA AGCATTTTTA GAGGAAGCTT CAAAACAACC AGGTAAAGCT 
TGGGTTTACA ATCCTGATGA CCCTGGAAAG TTATTACTTA AAGATGGTAG GACAGGGGAA 
CCTTTCGATC AGCCAGTTGC TGTTGGATAC TCTCACTTCC TCAAGTTAGT TCATTTAGTG 
GATGATAAAA TTCATGCTAG ATCTACTGGG CCTTACTCTT TAGTTACACA GCAACCATTG 
GGTGGTAAAG CTCAGCAAGG TGGACAAAGG CTTGGAGAAA TGGAAGTATG GGCTCTTGAA 
GCTTATGGAG CCGCTTACAC ACTGCAAGAA TTGTTAACAG TTAAATCTGA CGATATGCAA 
GGAAGAAATG AAGCGCTTAA TGCAATCGTA AAAGGTAAAC CGATCCCAAG GCCTGGTACT 
CCTGAATCAT TTAAAGTTCT TATGAGGGAA TTACAATCTC TAGGGTTGGA TATAGGAGTT 
TATACAGATG AAGGAAAAGA AGTAGATCTA ATGCAAGATA TAAACCCGAG AAGAAATACT 
CCATCAAGAC CTACTTACGA ATCTCTCGGA ACCTCAGAAT ATGAGGAAGA TTAA 

 

Protein sequence

MSSSALQVAK TATYLPDLVE VQRASFKWFL EKGLIEELQN FSPISDYTGK LELHFIGEEY 
RLKRPRHDVE EAKRRDATFA SQMYVTCRLI NKETGEIKEQ EVFIGELPLM TERGTFIING 
AERVIVNQIV RSPGVYFKDE LDKNGRRTYN ASVIPNRGAW LKFETDKNNL LYVRVDKTRK 
INAHVLMRAM GLSDNDVVDK LRHPEFYQSS IESANDEGIN SEDQALLELY KKLRPGEPPS 
VSGGQQLLHS RFFDPKRYDL GRVGRYKINK KLRLTVPDNV RTLTHEDVLS TIDYLINLEL 
DIGGASLDDI DHLGNRRVRS VGELLQNQVR VGLNRLERII KERMTVGETD SLTPAQLVNP 
KPLVAAIKEF FGSSQLSQFM DQTNPLAELT HKRRISALGP GGLTRERAGF AVRDIHPSHY 
GRLCPIETPE GPNAGLINSL ATHARVNEYG FIETPFWEVK NGKVDKEGNP VYLSADLEDE 
CRVAPGDVAT DKDGNIIANL IPVRYRQDFE KVPPHQVDYV QLSPVQVISV ATSLIPFLEH 
DDANRALMGS NMQRQAVPLL RPERPLVGTG LESQVARDSG MVPITKVNGT VSYVDANEIV 
VKDEDGNEHF HYLQKYQRSN QDTCLNQRPI VKIGDRVISG QVLADGSACE GGEIALGQNV 
LIAYMPWEGY NYEDAILVSE RMVTDDLYTS VHIEKYEIEA RQTKLGPEEI TREIPNISEE 
SLNNLDEMGI IRIGAFVESG DILVGKVTPK GESDQPPEEK LLRAIFGEKA RDVRDNSLRV 
PKTEKGRVLD VRIYTREQGD ELPPGANMVV RVYVAQRRKI QVGDKMAGRH GNKGIISRIL 
PREDMPYLPD GTPVDIVLNP LGVPSRMNVG QVFELLMGWA AANLNCRVKV VPFDEMYGAE 
KSHQTVQAFL EEASKQPGKA WVYNPDDPGK LLLKDGRTGE PFDQPVAVGY SHFLKLVHLV 
DDKIHARSTG PYSLVTQQPL GGKAQQGGQR LGEMEVWALE AYGAAYTLQE LLTVKSDDMQ 
GRNEALNAIV KGKPIPRPGT PESFKVLMRE LQSLGLDIGV YTDEGKEVDL MQDINPRRNT 
PSRPTYESLG TSEYEED