| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9301_09711 |
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| Symbol | dapF |
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| ID | 4911663 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9301 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009091 |
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| Strand | + |
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| Start bp | 840497 |
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| End bp | 841357 |
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| Gene Length | 861 bp |
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| Protein Length | 286 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 640160555 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001091195 |
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| Protein GI | 126696309 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.646782 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAAATA TAACTTTTGA AAAATATCAA GGTAACGGAA ATGATTTCGT AGTAATTGAT
TCTAGAGGAA ATGATTTATA TAAAAATTAC AAGACAAATA AAATATTTGA TATAAAACAA
ATTTGCAACA GGCAATTTGG TATTGGAGCA GATGGTGTGA TTTTTATAGA AGAACCTAAA
GAAGATAATT ATGCAAAAAT GATAATCTTT AATTCTGATG GTTCTGAAGC ACAAATGTGT
GGAAACGGAA TTAGGTGTTT AGTTGAGTAT CTCCACCTAA ATGATTCAAT GAATAATAAA
AATATAGAAT ATAAAATTGA GACTAAAGCA GGTTTAAAAA TCGCAAAATA TATAAATGAT
GAAATTACAG TAAAAATGGG AGTTCCAATT TTAGAATGTC AAAATATTCC AACAACAATT
GAAAAAAAAA TAAATTCAAT TCCTTCACAC GAATTTATTG AGAAAGATTT TAATAATATG
GGTTATGCCG TAGGAATGGG CAATCCTCAT TTAATATTCT TTGTAAAAGA CATAGAGTCA
ATTATTCTTT CCAGACTTGG TCCTATACTA GAAAAAAATG AATTATTTCC TGAAAAAACT
AATGTGCATT TTTGTCAAAT TTTAAATAGA GATAATATCA AAGTAAAAGT ATGGGAAAGG
GGTGCAGGAC CAACCTTAGC TTGTGGAACA GGTGCCTGTG CTATTCATGT AGCAGCTTAT
AAATTAGGCC TTTGTAATTC ACAAACCATA GTAACTTTAC CAGGAGGTAA TCTTAAAATT
GATTGGTCAA AAGACGATTG TGAAGTCATG ATGACCGGTA ATGCTAAAAA GGTTTTCTCA
GGATCAATGC TAGTAAATTA A
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| Protein sequence | MKNITFEKYQ GNGNDFVVID SRGNDLYKNY KTNKIFDIKQ ICNRQFGIGA DGVIFIEEPK
EDNYAKMIIF NSDGSEAQMC GNGIRCLVEY LHLNDSMNNK NIEYKIETKA GLKIAKYIND
EITVKMGVPI LECQNIPTTI EKKINSIPSH EFIEKDFNNM GYAVGMGNPH LIFFVKDIES
IILSRLGPIL EKNELFPEKT NVHFCQILNR DNIKVKVWER GAGPTLACGT GACAIHVAAY
KLGLCNSQTI VTLPGGNLKI DWSKDDCEVM MTGNAKKVFS GSMLVN
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