| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9301_09301 |
|---|
| Symbol | secF |
|---|
| ID | 4912283 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9301 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009091 |
|---|
| Strand | + |
|---|
| Start bp | 800630 |
|---|
| End bp | 801544 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 26% |
|---|
| IMG OID | 640160513 |
|---|
| Product | preprotein translocase subunit SecF |
|---|
| Protein accession | YP_001091154 |
|---|
| Protein GI | 126696268 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.359776 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATACA ATCTTCAACT AATAAAGAAT AAAAGAAAGA TAATTAGTTT TTCAACTTTT
CTTATTTTGT TAAGTCTTTT AGGAATTTTA TATTCAACTT TTAATACTTC TTATAAGAAA
CCTATAAATT TAGGGATGGA TTTTGTTGGA GGAAATGAAC TAAGAATTGA AAGAGTTTGT
GAAGAAGAAT GTTCTAATCT TTCCCCTGAT TCAGTTTTAG AAAATTTAAG AGATATCTCT
AGTAATAAAA ACTTTATAAA TAATATTAAA TTACAATTCC AAAATAATAA TAAATTAATT
TCTATTAGAA CACCTTATTT GAGTATCGAA GAATCAAATA ATCTAATTAC TAATCTTGAT
AATATTATTG GACCTCTAAA TTATGAGAGT AAAGATTCAA GATTAATAGG CCCAAAGCTT
GGGAAAAGAT TACTAACCAA TTGTGTTACT TCATTGTTGG TTTCTTTATT TGCAATATCT
TTATATATAA CTATTAGGTT TGATAAAAAA TATGCATTAT TTGCATTATT AGCTTTATTC
CATGATTTAT TAATTGTTTT CGGTATATTT TCCTGGTTGG GAATTATATT ATCTGTCGAG
GTAAATAGTT TATTTGCGGT GTCCTTATTA ACTATTGCTG GTTATTCTGT AAATGATACT
GTTGTTATTT TTGATAGAAT TCGTGAGAAT TTAAAATCAA AGGAAGAAGG CTATAACGAA
ACTATTCAAT TATCAGTAAA CGAATCATTT AGGAGAACAA CTTTTACCAG TATTACAACC
CTTATCCCTT TATTAAGCAT AATTTTGTTT GGATCTTACT CGCTATTTTG GTTTTCCTTG
GCCTTATCAT TAGGAATTAT TGTTGGAAGT TATTCAAGTA TTTTATTGGC TCCATCTTTG
TTGCTTAAAG ATTGA
|
|---|
| Protein sequence | MKYNLQLIKN KRKIISFSTF LILLSLLGIL YSTFNTSYKK PINLGMDFVG GNELRIERVC
EEECSNLSPD SVLENLRDIS SNKNFINNIK LQFQNNNKLI SIRTPYLSIE ESNNLITNLD
NIIGPLNYES KDSRLIGPKL GKRLLTNCVT SLLVSLFAIS LYITIRFDKK YALFALLALF
HDLLIVFGIF SWLGIILSVE VNSLFAVSLL TIAGYSVNDT VVIFDRIREN LKSKEEGYNE
TIQLSVNESF RRTTFTSITT LIPLLSIILF GSYSLFWFSL ALSLGIIVGS YSSILLAPSL
LLKD
|
|---|
| |