| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9301_05231 |
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| Symbol | |
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| ID | 4912354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9301 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009091 |
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| Strand | - |
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| Start bp | 454709 |
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| End bp | 455893 |
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| Gene Length | 1185 bp |
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| Protein Length | 394 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 640160103 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001090747 |
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| Protein GI | 126695861 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGTCCAG TCGCAGCAGA ATCAAAGAAT TCCAAGCCCA GTTCCAAAAA AAAGATCAAT
AAAAAAATTA ATACAAATTT AGAAACCGTA GTTGAAGAAG ATAGTAATAA AAATAGCCAA
CCCTTAAAAA CATCTGCTGA GTTAAACGAA AGCAGTATTG AAAATAACAA TAATGAATTT
AGTGATTCTG AAGAAGAAGA TAAAGGGCTC GGGAATATAA AACTTGGGCC AAAAGGTATC
TATACTGAAG ATTCAATAAG AGTTTATCTC CAAGAAATCG GAAGAATTAG ACTTTTAAGA
CCAGATGAAG AAATTGAGCT TGCAAGAAAA ATTGCTGACT TACTCCAATT AGAAGAGCTA
GCAACTCAAT ATGAGTCAGA AAAAGGGCAT TTCCCATCTG TAAGAGAATG GGCCGAGTTA
ATAGATATGC CTCTTCCCAA ATTTAGAAGA AGACTGCTCC TAGGGCGGAG AGCAAAAGAA
AAAATGGTTC AATCAAATTT AAGATTAGTT GTTTCAATTG CTAAAAAATA TATGAACAGA
GGTTTATCAT TTCAAGATTT AATCCAAGAA GGAAGTTTGG GTCTAATTAG AGCAGCGGAA
AAATTCGACC ATGAAAAAGG TTATAAGTTC TCTACATATG CAACTTGGTG GATTCGCCAA
GCTATTACAA GAGCAATTGC GGATCAAAGT AGAACTATTA GATTGCCAGT TCACTTATAC
GAGACAATAT CCAGAATTAA AAAAACCACA AAAGTTCTTA GTCAAGAATT TGGCAGGAAA
CCTAGTGAAG AAGAAATCGC TGAGAGTATG GAAATGACAA TCGAAAAATT AAGATTTATA
GCTAAAAGTG CGCAACTTCC TATTTCTTTA GAAACTCCAA TAGGGAAAGA AGAAGACTCA
AGACTAGGAG ACTTTATAGA GGCTGATATA GAAAATCCAG AGCAAGATGT ATCTAAAACT
TTACTAAGAG AAGATTTGGA AGGAGTATTA GCCACTCTTA GTCCAAGAGA AAGAGATGTT
CTCAGATTGA GATATGGAAT TGATGATGGA AGAATGAAAA CTCTTGAAGA AATTGGCCAA
ATTTTTGATG TGACGAGAGA AAGAATTAGA CAAATAGAGG CAAAAGCCCT AAGAAAACTT
AGACATCCAA ATCGAAATGG GGTTTTAAAA GAATATATAA AATAA
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| Protein sequence | MCPVAAESKN SKPSSKKKIN KKINTNLETV VEEDSNKNSQ PLKTSAELNE SSIENNNNEF
SDSEEEDKGL GNIKLGPKGI YTEDSIRVYL QEIGRIRLLR PDEEIELARK IADLLQLEEL
ATQYESEKGH FPSVREWAEL IDMPLPKFRR RLLLGRRAKE KMVQSNLRLV VSIAKKYMNR
GLSFQDLIQE GSLGLIRAAE KFDHEKGYKF STYATWWIRQ AITRAIADQS RTIRLPVHLY
ETISRIKKTT KVLSQEFGRK PSEEEIAESM EMTIEKLRFI AKSAQLPISL ETPIGKEEDS
RLGDFIEADI ENPEQDVSKT LLREDLEGVL ATLSPRERDV LRLRYGIDDG RMKTLEEIGQ
IFDVTRERIR QIEAKALRKL RHPNRNGVLK EYIK
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