| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9301_03401 |
|---|
| Symbol | psbB |
|---|
| ID | 4912483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9301 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009091 |
|---|
| Strand | - |
|---|
| Start bp | 310621 |
|---|
| End bp | 312144 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640159910 |
|---|
| Product | photosystem II PsbB protein (CP47) |
|---|
| Protein accession | YP_001090564 |
|---|
| Protein GI | 126695678 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03039] photosystem II chlorophyll-binding protein CP47 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGATTGC CTTGGTATCG AGTTCACACA GTAGTTATTA ATGACCCAGG TCGACTACTT
GCTGTGCATC TTATGCATAC TGCATTATTA GCCGGCTGGG CCGGTTCAAT GGCTCTTTAC
GAATTAGCCA TTTTTGATCC TTCTGATGCT GTTCTCAATC CAATGTGGAG ACAGGGGATG
TACGTTATGC CTTTTATGGC AAGACTAGGT ATCACAAGTA GTTGGAACGG ATGGGATATT
ACCGGTGCTA CTGGAGTTGA TCCTGGATTC TGGAGTTTCG AAGGGGTTGC CGCAGCTCAC
ATAGTATTTA GTGGTCTATT AATGTTGGCC TCTATTTGGC ACTGGACATA CTGGGACTTA
GATTTGTGGG AAGATTCAAG AACTGGTGAA CCTGCTCTTG ACTTGCCAAG AATTTTCGGG
ATTCACCTCC TTCTAGCAGG ACTAACCTGT TTTGGTTTTG GAGCTTTTCA TTGTGCAAAC
GTTGGGATTT GGGTTTCTGA CCCTTATGGC TTAACTGGTC ACGTAGAACC TGTGGCTCCA
TCCTGGGGAG TAGAAGGATT TAATCCTTTT AATCCTGGAG GTATAGTGGC GAACCATATT
GCAGCAGGAC TTATGGGTAT TATTGGAGGT ATTTTTCATA TCACCAATAG ACCTGGAGAA
AGACTTTATA GAGCACTAAA ACTTGGAAGT CTCGAGGGAG TTCTAGCTAG TGCTTTGGCT
GCTGTATTAT TTGTTTCTTT CGTTGTTTCC GGAACAATGT GGTACGGTTC AGCAACAACT
CCGGTAGAGC TTTTTGGTCC TACCAGATAT CAATGGGATT CAGGCTATTT CAAAACTGAA
ATCAATAGAA GAGTGCAAGC TGCTATAGAT GATGGTGCCA CTAAATCAGA GGCATATGCA
TCGATTCCAG AAAAATTAGC CTTCTACGAT TACGTTGGAA ATAGTCCAGC TAAAGGAGGA
CTATTTAGAG TTGGAGCTCT TGTTAATGGT GATGGATTAC CAACTGGTTG GCAAGGTCAC
ATTGCTTTTC AAGATAAGGA AGGTAACGAA TTAGAAGTTA GAAGAATTCC TAATTTCTTT
GAAAACTTCC CTGTCATTCT TGAAGACAAA GAAGGTAATG TAAGAGCAGA TATCCCATTT
AGAAGAGCTG AAGCAAAGTA TTCATTCGAA CAGACTGGTA TAACTGCAAC TATCTATGGA
GGAGACCTAG ATGGACAAAC ATTTACAGAC CCTGCAGTAG TTAAAAGGTT AGCTAGAAAA
GCTCAACTTG GAGAAGCATT CAAGTTTGAC AGAGAAACAT ATAAATCTGA TGGCGTATTC
CGAAGTTCTC CAAGAGCCTG GTTTACATAT GCACATTTAT GTTTCGGATT GCTATTCTTA
TTTGGTCACT GGTGGCATGC TTCAAGAACT CTTTACAGAA ATTCCTTTGC TGGTATTGAT
GCTGAGATTG GAGACCAAGT TGAATTTGGT TTATTCAAGA AACTTGGTGA CGAAACCACA
AGAAGAATCC CAGGAAGGGT TTAA
|
|---|
| Protein sequence | MGLPWYRVHT VVINDPGRLL AVHLMHTALL AGWAGSMALY ELAIFDPSDA VLNPMWRQGM
YVMPFMARLG ITSSWNGWDI TGATGVDPGF WSFEGVAAAH IVFSGLLMLA SIWHWTYWDL
DLWEDSRTGE PALDLPRIFG IHLLLAGLTC FGFGAFHCAN VGIWVSDPYG LTGHVEPVAP
SWGVEGFNPF NPGGIVANHI AAGLMGIIGG IFHITNRPGE RLYRALKLGS LEGVLASALA
AVLFVSFVVS GTMWYGSATT PVELFGPTRY QWDSGYFKTE INRRVQAAID DGATKSEAYA
SIPEKLAFYD YVGNSPAKGG LFRVGALVNG DGLPTGWQGH IAFQDKEGNE LEVRRIPNFF
ENFPVILEDK EGNVRADIPF RRAEAKYSFE QTGITATIYG GDLDGQTFTD PAVVKRLARK
AQLGEAFKFD RETYKSDGVF RSSPRAWFTY AHLCFGLLFL FGHWWHASRT LYRNSFAGID
AEIGDQVEFG LFKKLGDETT RRIPGRV
|
|---|
| |