| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMA10247_2669 |
|---|
| Symbol | gspJ |
|---|
| ID | 4892814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia mallei NCTC 10247 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009080 |
|---|
| Strand | + |
|---|
| Start bp | 2633266 |
|---|
| End bp | 2633994 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640151320 |
|---|
| Product | general secretory pathway protein J |
|---|
| Protein accession | YP_001082194 |
|---|
| Protein GI | 126451195 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4795] Type II secretory pathway, component PulJ |
|---|
| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.393113 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCAG CCGTCCGCTC TGAGCGCCGC GCGCCCGGCG AGAAACGCCC GCGGCGGGCG
CGCCGCGCCT TCCGGCGAGG CGCGCGCCAC AGCGCGCGCG GCTTCACGCT GATCGAAATG
ATGATCGCGA TCACGATTCT CGCGGTGATC GCGATCCTGT CGTGGCGCGG GCTCGACCAG
ATCATCCGCG GCCGCGAGAA GGTGGCGGCC GCGATGGAGG ACGAGCGCGT GTTCGCGCAG
ATGTTCGACC AGATGCGCAT CGACGCGCGG CGCGCGGCGA CCGACGACGA AGCGGGCCAG
CCCGCGGTGC GCGTCGCGGG CGACACGCTG CAGATCGTGC GCGAGTTCGA CGCGCCGGGC
GCGGCGCCGC GCCTGCAGGT CGTGCGCTAC CGGATTTCGA ACGGGCGCGT CGTGCGTTAC
GCGTCGCCGC CGATCGGCGA CGTCAACGCG CTGCGCGACG CGCTGCGCGG CGGCGATACC
GAAGGCTGGA GCGAGGTGGC GCTGATGCGC GGCGTCGGCA TGATCAACGC GCGGCTGTAC
GTGCCGAAGG TCGGCTGGAC GACCAGCATG CCGGACGCCG ACAACGCGCT CGAGCAGAAC
AACAACGCGC TCAAGGTGCC GATGCTCGGC AACGCGCCGC CGCCGCGCGC GGTGACGGGG
CTCGAGGTGA GCATCGGCGC GACGTCGCTG CGCGTGCCGA TCACGCGCAT TTTCCTGATC
GGGGAGTGA
|
|---|
| Protein sequence | MKPAVRSERR APGEKRPRRA RRAFRRGARH SARGFTLIEM MIAITILAVI AILSWRGLDQ
IIRGREKVAA AMEDERVFAQ MFDQMRIDAR RAATDDEAGQ PAVRVAGDTL QIVREFDAPG
AAPRLQVVRY RISNGRVVRY ASPPIGDVNA LRDALRGGDT EGWSEVALMR GVGMINARLY
VPKVGWTTSM PDADNALEQN NNALKVPMLG NAPPPRAVTG LEVSIGATSL RVPITRIFLI
GE
|
|---|
| |