| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMA10247_1343 |
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| Symbol | dapE |
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| ID | 4893549 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia mallei NCTC 10247 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009080 |
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| Strand | + |
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| Start bp | 1326974 |
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| End bp | 1328113 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640150001 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_001080894 |
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| Protein GI | 126449287 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.355726 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGCCA CCCTTGCCCT CACCGAACAG TTGATCGCGC GCGCGTCCGT CACGCCCGAC
GATCAGCACT GCCAGCAATT GATGATCGAG CGCCTCGCCG CCCTCGGCTT CGAGTGCGAA
ACGATCGCGT CGCACGGCGT GACGAACTTC TGGGCCGTCA AGCGCGGCAC GGCCGGCCGC
GCAGGCAAGC TGCTCGCGTT CGCGGGCCAT ACCGACGTCG TGCCGACCGG CCCGCTCGAG
CAGTGGCGCT CGCCGCCGTT CGTGCCGACG CACCGCGACG GCAAGCTGTA CGGCCGCGGC
GCGGCCGACA TGAAAACCTC GCTCGCGGGC TTCGTCGTCG CGGCCGAGGA GTTCGTCGCC
GCGCATCCGC AGCACCGCGG CTCGATCGGT TTCCTGATCA CGAGCGACGA GGAAGGCCCG
GCCACCGACG GCACCGTGAA AGTCGTCGAG GCGCTCGCCG CGCGCGGCGA GCGCCTCGAT
TACTGCATCG TCGGCGAACC GACCTCGACG GCGACGCTCG GCGACGTCGT GAAGAACGGC
CGGCGCGGCT CGATGTCGGG CGAGCTCGTC GTCAAGGGCG TGCAAGGCCA TATCGCGTAT
CCGCATCTCG CGAAGAACCC GATCCATCTG CTCGCGCCGG CGCTCGCCGA GCTCGCCGCC
GAGCAATGGG ACGAAGGCAA CGAGTACTTT CCGCCGACCA CCTGGCAGGT GTCGAACCTG
CGCGCGGGCA CCGGCGCGAC GAACGTGATT CCGGGCCACG CCGATCTGCT GTTCAACTTC
CGCTTCTCGA CGGCGAGCAC GGTCGAGGGC CTGCAGGCGC GCGTGCACGC GATCCTCGAC
AGGCACGGGC TCGATTACAC GCTGAACTGG TCGGTGAGCG GCCTGCCGTT CCTCACGCCG
CGCGGCGAGC TGTCGAACGC GCTCGACGCC GCGATCCGCG CGGAAACGGG CGTCTCGCCC
GAGCTGTCGA CGACGGGCGG CACGTCCGAC GGCCGCTTCA TCGCGCGCAT CTGCCCGCAG
GTGATCGAGT TCGGCCCGCC GAACGCGAGC ATCCACAAGA TCGACGAGCA CATCGACGTG
CGCTTCGTCG ACCCGCTGAA GAACGTGTAC CGCCGCGTGC TCGAACAACT GATCGCCTGA
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| Protein sequence | MSATLALTEQ LIARASVTPD DQHCQQLMIE RLAALGFECE TIASHGVTNF WAVKRGTAGR
AGKLLAFAGH TDVVPTGPLE QWRSPPFVPT HRDGKLYGRG AADMKTSLAG FVVAAEEFVA
AHPQHRGSIG FLITSDEEGP ATDGTVKVVE ALAARGERLD YCIVGEPTST ATLGDVVKNG
RRGSMSGELV VKGVQGHIAY PHLAKNPIHL LAPALAELAA EQWDEGNEYF PPTTWQVSNL
RAGTGATNVI PGHADLLFNF RFSTASTVEG LQARVHAILD RHGLDYTLNW SVSGLPFLTP
RGELSNALDA AIRAETGVSP ELSTTGGTSD GRFIARICPQ VIEFGPPNAS IHKIDEHIDV
RFVDPLKNVY RRVLEQLIA
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