Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BMA10247_A0637 |
Symbol | sctR |
ID | 4889402 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia mallei NCTC 10247 |
Kingdom | Bacteria |
Replicon accession | NC_009079 |
Strand | + |
Start bp | 592185 |
End bp | 592835 |
Gene Length | 651 bp |
Protein Length | 216 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640146913 |
Product | type III secretion system protein |
Protein accession | YP_001077838 |
Protein GI | 126447834 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4790] Type III secretory pathway, component EscR |
TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTCAGT TTAACGACAT CACCGGCCTC TTGATCGCCG TGCTCGTGAT GAGCATGGTG CCGTTCATCG CGATGGTGGT CACCTCGTAC GCGAAGATCG TCGTCGTGCT CGGCCTGCTG CGCAACGCGC TCGGCGTGCA GCAGGTGCCG CCGAACATGG TGCTCAACGG CATCGCGATT CTCGTGTCGC TGTACATCAT GGCGCCGATC GGCTTCGCCG CGCAGCAGCA GCTTCAGGGG CAGGCGCTGT CGCCGCAGCC GACGCAGGCG ATGCTGCAGG CGTTCGGCGC GGCGAAGGAG CCGTTTCGCC GGTTCCTCGC CGCGCACTCG CGCGAGCGCG AGAAGCGTTT CTTCCTGCGC TCCGCGTCGG TGATCTGGCC GCAGGCCGCG GCCGCGCAAC TGCGCGAGGA CGACCTGATC GTCCTCGCGC CCGCGTTCAC GCTCGCGCAG ATGACCGATG CGTTCCGCAT CGGCTTCATC CTCTACATCG CGTTCATCAT CGTCGATCTC GTGATCGCGA ACGTGCTGAT GTCGATGGGG ATGAACCAGG TGCAGCCGAC CAACGTCGCG ATCCCGTTCA AGCTGATGCT GTTCGTCGTG ATGGACGGCT GGTCGACGCT CGTGCACGGC CTCGTGCTGA CCTATTCCTG A
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Protein sequence | MVQFNDITGL LIAVLVMSMV PFIAMVVTSY AKIVVVLGLL RNALGVQQVP PNMVLNGIAI LVSLYIMAPI GFAAQQQLQG QALSPQPTQA MLQAFGAAKE PFRRFLAAHS REREKRFFLR SASVIWPQAA AAQLREDDLI VLAPAFTLAQ MTDAFRIGFI LYIAFIIVDL VIANVLMSMG MNQVQPTNVA IPFKLMLFVV MDGWSTLVHG LVLTYS
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