Gene BURPS1106A_A3161 details

Gene Information

• Locus tag: BURPS1106A_A3161
• Symbol: shc
• ID: 4904514
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1106a
• Kingdom: Bacteria
• Replicon accession: NC_009078
• Strand: -
• Start bp: 3081565
• End bp: 3083538
• Gene Length: 1974 bp
• Protein Length: 657 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 640146264
• Product: squalene-hopene cyclase
• Protein accession: YP_001077190
• Protein GI: 126456557
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG1657] Squalene cyclase
• TIGRFAM ID: [TIGR01507] squalene-hopene cyclase; [TIGR01787] squalene/oxidosqualene cyclases

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGACA TGACCGAAAT GCATACGCTC GACGCAACCG CCGCGCCGGC CGGCCTCGAC 
GCCGCCGTCG CGCGCGCGAC CGACGCGCTG CTCGCCGCGC AGCAAGCGGA CGGCCACTGG 
GTCTACGAGC TCGAAGCCGA TTCGACGATC CCGGCCGAAT ACGTGCTGCT CGTCCACTAT 
CTCGGCGAGG CGCCGAATGT CGAGCTCGAG CAGAAGATCG CGCGCTATCT GCGCCGGATT 
CAGCAGCCGG ACGGCGGCTG GCCGCTCTTC ACCGACGGTG CGCCGAACAT TAGCGCGAGC 
GTGAAGGCGT ACTTCGCGCT GAAGGTGATC GGCGACGACG AGAACGCCGA GCACATGCAG 
CGCGCGCGCC GCGCGATCCA CGCGATGGGC GGCGCGGAGA TGTCGAACGT GTTCACGCGG 
ATTCAGCTCG CGCTGTACGG CGTCGTGCCG TGGTACGCGG TGCCGATGAT GCCGGTCGAG 
ATCATGCTGC TGCCGCAGTG GTTCCCGTTC CATCTGTCGA AGGTGTCGTA CTGGGCGCGC 
ACCGTGATCG TGCCGCTGCT CGTGCTGAAC GCGAAGCGCC CGGTCGCGAA GAATCCGCGC 
GGCGTGCGCA TCGACGAGCT GTTCAAGGGC GCACCCGTCA GCACCGGCCT GCTGCCGAAG 
CAGCCGCACC AGAGCGCCGG CTGGTTTGCG TTCTTCCGCG CGGTCGACGG GGTGCTGCGT 
CTCGTCGACG GCCTCTTCCC GCGCTATACG CGCGAGCGCG CGATCCGCCA GGCGGTCGCG 
TTCGTCGACG AGCGCCTGAA CGGCGAGGAC GGGCTCGGCG CGATCTATCC CGCGATGGCC 
AACGCGGTGA TGATGTACGC GGCGCTCGGC TATCCCGAAG ATCATCCGAA CCGCGCGATC 
GCGCGCCGCT CGATCGAGAA GCTGCTCGTC GTCGGCGAGC AAGAGGCGTA TTGCCAGCCG 
TGCCTGTCGC CGGTATGGGA CACGTCGCTT GCCGCGCACG CGCTGCTCGA GACGGGCGAC 
GCGCGCGCGC GCGAAGCGGC GGTGCGCGGC CTCGACTGGC TCGTGCCGCG GCAGATCCTC 
GACGTGCGCG GCGACTGGAT CTCGCGCCGT CCGCACGTGC GCCCCGGCGG CTGGGCGTTC 
CAGTACGCGA ATGCGCACTA TCCGGACGTC GACGACACGG CGGTCGTCGC GATGGCGATG 
GACCGCGTCG CGAAGCTCGA CCGGACCGAC GCGTATCGCG AGTCGATCGC GCGCGCGCGC 
GAGTGGGTTG TCGGCATGCA GAGCAGCGAC GGCGGCTGGG GCGCGTTCGA GCCGGAAAAC 
ACGCAGTACT ACCTGAACAA CATTCCGTTC TCCGATCACG GCGCGCTGCT CGATCCGCCG 
ACGGCCGACG TGTCGGGCCG CTGCCTGTCG ATGCTCGCGC AGTTCGGCGA GACGAGCGCG 
TCGAGCGAGC CCGCGCGCCG CGCGCTCGAC TACATGCTCA AGGAGCAGGA GCCGGACGGC 
AGCTGGTACG GCCGCTGGGG GATGAACTAC ATCTACGGCA CGTGGACCGC GCTGTGCTCG 
CTGAACGCGG CGGGCCTCGG CCACGACGAT CCGCGCGTGA AGCGCGCCGC GCAATGGCTG 
CTGTCGATCC AGAACGCCGA CGGCGGCTGG GGCGAGGACG GCGACAGCTA CAAGCTCGAC 
TACCGCGGCT ACGAGCGCGC GCCGAGCACG TCGTCGCAGA CCGCGTGGGC GCTGCTCGGC 
CTGATGGCGG CGGGCGAAGT CGACAATCCC GCCGTCGCGC GCGGCGTCGA TTACCTGCTC 
GGCACGCAGC GCGAGCACGG CCTGTGGGAC GAGACGCGCT TCACCGCGAC GGGCTTCCCG 
CGCGTGTTCT ATCTGCGCTA CCACGGCTAC CGCAAGTTCT TCCCGCTGTG GGCGCTCGCC 
CGCTATCGCA ACCTGAAGCG CGCGAACGCG ACGCGCGTGA CGGTCGGGAT GTAA 

 

Protein sequence

MNDMTEMHTL DATAAPAGLD AAVARATDAL LAAQQADGHW VYELEADSTI PAEYVLLVHY 
LGEAPNVELE QKIARYLRRI QQPDGGWPLF TDGAPNISAS VKAYFALKVI GDDENAEHMQ 
RARRAIHAMG GAEMSNVFTR IQLALYGVVP WYAVPMMPVE IMLLPQWFPF HLSKVSYWAR 
TVIVPLLVLN AKRPVAKNPR GVRIDELFKG APVSTGLLPK QPHQSAGWFA FFRAVDGVLR 
LVDGLFPRYT RERAIRQAVA FVDERLNGED GLGAIYPAMA NAVMMYAALG YPEDHPNRAI 
ARRSIEKLLV VGEQEAYCQP CLSPVWDTSL AAHALLETGD ARAREAAVRG LDWLVPRQIL 
DVRGDWISRR PHVRPGGWAF QYANAHYPDV DDTAVVAMAM DRVAKLDRTD AYRESIARAR 
EWVVGMQSSD GGWGAFEPEN TQYYLNNIPF SDHGALLDPP TADVSGRCLS MLAQFGETSA 
SSEPARRALD YMLKEQEPDG SWYGRWGMNY IYGTWTALCS LNAAGLGHDD PRVKRAAQWL 
LSIQNADGGW GEDGDSYKLD YRGYERAPST SSQTAWALLG LMAAGEVDNP AVARGVDYLL 
GTQREHGLWD ETRFTATGFP RVFYLRYHGY RKFFPLWALA RYRNLKRANA TRVTVGM