Gene BURPS1106A_A2988 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBURPS1106A_A2988 
Symbol 
ID4904376 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia pseudomallei 1106a 
KingdomBacteria 
Replicon accessionNC_009078 
Strand
Start bp2909311 
End bp2912802 
Gene Length3492 bp 
Protein Length1163 aa 
Translation table11 
GC content72% 
IMG OID640146091 
ProductDNA ligase, ATP-dependent 
Protein accessionYP_001077017 
Protein GI126458457 
COG category[L] Replication, recombination and repair 
COG ID[COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase 
TIGRFAM ID[TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGGGAA AACTCAGCGT GTACCGCAGC AGGCGGCGCT TCGGCGAAAC GCCGGAGCCC 
GAGGGCGCGC GGCGGTCGCC GCGCCGCACG AAAGGCGCGG GCCGCGCGGG CGACGAATCG
AAGCGGCGCG CGCGCGGCGA TGCGGCGGCG TCGAGCCGCG GCGAGCGCGT CGCTCGCCGT
GGCCGCGCGC AGCAGCCGGC GCCGGCGCGC GGCAGGTCCG CGCTTCATTA CGTGATCCAG
GAGCATCACG CGCGTCGCTT GCATTACGAC TTTCGTCTCG AACTCGATGG CACGCTCAAA
TCGTGGGCGA TCCCGAAAGG GCCGAGCCTC GATCCTTCGG TCAAGCGGCT CGCGGTGCAC
GTCGAGGATC ATCCGCTCGA ATACGCGGCG TTCGAGGGCG AGATTCCGGA GGGCCATTAC
GGCGCGGGCT CGGTGATTGT CTGGGATCGC GGCGCATGGA CGCCCGCCGG TGGCATCGCC
GCCGCGCGCG CCGGCTATCG CGCGGGCAAG CTGAGCTTCA CGCTCGACGG GGACAAGCTG
CACGGCGGCT GGGCGCTCGT GCGCGGCCGC GGGCTGCGTG ACAGCGGCGG CAAGCACGAG
CAATGGCTGC TGATCAAGGA ACGCGACGGC GACGCGCGCG ACCAAGCGGA CTACGACGTG
CTGCGCGCAC GGCCGGGCAG CGTGCTCGGC GGCGCGCGGT CCGCGCGGGC GAGGCGCGGG
CGCGCGGCCG AGCCGACGGA GCGCGACGCC GCCGCGCCGA AGCGGGCGCG CGCTTCAGTG
CCGAAAGGGC GCGCCGAAGC GAAGACGAGC GGGCGTGCGC CGCGCACCGT GTCGAACGGG
ACTGCGGGCG CGGGTAAGGG CGCAAGCAAG CGTGCAAGCA AGCGCGAGGG CACGAATACC
GGAAACGGCG CGAGAAGCGG CAAGGGCAGC GGCAAGGGCA GCGGCAAGGG CGCGGGCAAG
GGCGCGGGCA AGGGCGGGGC CACACCGCGC CGCAAACGCG CCGCCGCGCC GCAGTCGTTC
GACGTCGATT CGGCCGATAC CGATTCACCC GCGGCGCGCG GCCTCGCGTT GCCCGCCGGG
CTTGCCGCGC GCTTCGGCCT GAGCGGCGCG AAGCGCGCGG CGCTGCCGCG CACGTTGCGG
CCGCAACTGG CGACGCTCGT CGACGCGCCG CCGCCCGGCA AAGACTGGCT ATACGAAGCG
AAGTTCGACG GCTACCGCGT GCTGATCCGG ATCGATCGCG GCGCGGCGTC CCGCCCGATT
GCCGTCTACA CGCGCGAGGG GCTCGACTGG AGCGCGAAAT TCGCCGCGCA GCTCGACGCG
CTCGCGCGCC TGCCGGTCGA CCGGGGCTGG CTCGACGGCG AGGCGGTCGT GCTCGATCGC
GCGGGCGTGC CGGATTTCCA GGCGCTGCAG AACGCGCTCG GCGCCGGACG CTCGAACGAT
GTCACGCTGT TCCTGTTCGA CGTGCCGTTC CTGAACGGCT TCGACCTGCG CGGCGTGCCG
CTCGAACGGC GGCGCGCGCT GCTCGCCGCG CTCGTCGCCG CGCATGCGAG CGACGTGCTG
CGTTACTCGG AGAGCCTCGC GTTCGAGGCC GCCGATCTGC TGACGGGCGC GTGCGACGCG
GGGCTCGAAG GGCTGATCGG CAAGCGGCGC GATGGCCGGT ACGTCGAGGG GCGCTCGAGA
TCGTGGATCA AGCTGAAGTG CCGGCGCAGG CAGGAGTTCG TGATTGGCGG CTACACGGAG
CCGGCCGGAC GGCGCAGCGG ATTCGGCGCG TTGCTGCTCG GCGTGTACGC CCGGGCGCCG
GGCGACGAGG GCGACGAGGG CGAACGAAGG ACGCGCGGCG CGGCCGAAAC GCGCGACGAG
CGGCGTCGTG CATCCCACGC ATCCCGCACA TCCCGCGCGC CCGATGCCGG CGCGGCGCGC
ACACCGCAGG CGCGGCCGCT CGCGTTGCGC TACGTCGGCC GCGTCGGCAC CGGCTTCGGC
GAGCGCACGC TTCGCGCGCT CGCGCGGACG CTGCGCGAGC ACGAGACCGG GCGGATGCCG
TTCGCGGACG TGCCGCGCGA GCGCAGCGGC ACGCCGGTTC ACTGGGTGAA GCCCGTGCTC
GTCGCCGAAT GCGAATTCGC GGAATGGACG GGCGACGGCA TCGTCCGGCA GGCGTCGTTC
GTCGGGCTGC GCGAAGACAA GCCGGCGCGC ACGATCGTTC GCGAGCAACC GCAATCCATG
GAGACGGAAG CCATGAATGA ACACGCTGAC GAACATACGG ATGAACATAC CGATGCACGC
GCCGAACGTC GCACCGGCGG ACGCACGCGG CGCAAAGCAC GTGACGGCGG CGCGCGCGAC
GCGCCGCCGC TTGCCCGCCA TCCGAAGCGC GGCGATGCGG GATCGTCCGC GCGCAAGGGC
GCGCGGGACG GGGAGGCGGG CAAGCGCGCC GCCGCGGGAT CGTCGCCTTC GTCTTCACCG
TCGAGTTCGA CTTCGACTTC GATTTCGGCG TCAGGGCGCA CGCGCGGGGG CGGTCGTTCC
GCCTCGCGCG ATCGAGCCGG CGATGCGGAC GAAGGCGCGA ACGAAGACGC GAACGATCAC
GCGCCGCGCG AGCGCGCCGG CGCGCCGAAG GTGGCGGGCG TGCGCGTCTC GCATCCCGGC
CGCGTGATCG ATCCGCACAC GGGCACGCGC AAGCTCGACC TCGTCGAATA CTGGGAATGG
ATCGCGCCGT GGCTGCTGCC GCATCTGAAG GGCCGGCCGG TGTCGCTCGT GCGCGCGCCC
GCCGACATCG GCAGCGAGCT GTTCTTCCAG AAGCACGCGG ACAAGCTGGA GATTCCGAAC
GTCGCGCTGC ACCCGGGGCT CGACCCGGGC CATGAGGCGC TCATCACGAT CGACGATGTG
AAGGGGCTCG TCGGCGCCGC GCAAATGGGC ACGATCGAGC TGCACACGTG GAACGCGCAC
GTGTCGAACA TCGAGAAGCC GGACCGCGCG GTGTTCGACC TCGACCCGGA CCCGTCGCTC
GACTGGCGCG CGGTGATCGA GGCCGCGCAG CTCACGCGCG CGCTGCTGGA CGAGCTCGGC
CTCGTGTCGT TCTGCAAGAC GAGCGGCGGC AAGGGGCTGC ACGTCGTCGT GCCGCTCGCG
CGCCATGCGG GCTGGGACGA TGTGAAGGCG TTCGCGCACG CGGTGGCGCG GCACATGGCG
GCGACCCTGC CCGAGCGCTT CACCGCGACG ATGGGGCCGC GCAACCGGAA GGGCAAGATC
TTCGTCGACT ATCTGCGCAA CAACCGCGGC GCGAGCACGA TCGCCGCGTA CTCGGTGCGC
GCGAGGCCGG GGCTTGGCGT ATCGGTGCCG ATCGCATGGG ACGAACTGCC GGATACGACG
GGCGCCGCGC AATGGACGCT CGCGAACCTG CACGAGCGTC TCGACGCGCT GAAGCACGAC
CCGTGGCGCG CCTATGCGCA TGTGCGGCAA CGCGTGACGG CGGCGTTGCG GAAGCGGCTG
AGCGATGGGT AG
 
Protein sequence
MAGKLSVYRS RRRFGETPEP EGARRSPRRT KGAGRAGDES KRRARGDAAA SSRGERVARR 
GRAQQPAPAR GRSALHYVIQ EHHARRLHYD FRLELDGTLK SWAIPKGPSL DPSVKRLAVH
VEDHPLEYAA FEGEIPEGHY GAGSVIVWDR GAWTPAGGIA AARAGYRAGK LSFTLDGDKL
HGGWALVRGR GLRDSGGKHE QWLLIKERDG DARDQADYDV LRARPGSVLG GARSARARRG
RAAEPTERDA AAPKRARASV PKGRAEAKTS GRAPRTVSNG TAGAGKGASK RASKREGTNT
GNGARSGKGS GKGSGKGAGK GAGKGGATPR RKRAAAPQSF DVDSADTDSP AARGLALPAG
LAARFGLSGA KRAALPRTLR PQLATLVDAP PPGKDWLYEA KFDGYRVLIR IDRGAASRPI
AVYTREGLDW SAKFAAQLDA LARLPVDRGW LDGEAVVLDR AGVPDFQALQ NALGAGRSND
VTLFLFDVPF LNGFDLRGVP LERRRALLAA LVAAHASDVL RYSESLAFEA ADLLTGACDA
GLEGLIGKRR DGRYVEGRSR SWIKLKCRRR QEFVIGGYTE PAGRRSGFGA LLLGVYARAP
GDEGDEGERR TRGAAETRDE RRRASHASRT SRAPDAGAAR TPQARPLALR YVGRVGTGFG
ERTLRALART LREHETGRMP FADVPRERSG TPVHWVKPVL VAECEFAEWT GDGIVRQASF
VGLREDKPAR TIVREQPQSM ETEAMNEHAD EHTDEHTDAR AERRTGGRTR RKARDGGARD
APPLARHPKR GDAGSSARKG ARDGEAGKRA AAGSSPSSSP SSSTSTSISA SGRTRGGGRS
ASRDRAGDAD EGANEDANDH APRERAGAPK VAGVRVSHPG RVIDPHTGTR KLDLVEYWEW
IAPWLLPHLK GRPVSLVRAP ADIGSELFFQ KHADKLEIPN VALHPGLDPG HEALITIDDV
KGLVGAAQMG TIELHTWNAH VSNIEKPDRA VFDLDPDPSL DWRAVIEAAQ LTRALLDELG
LVSFCKTSGG KGLHVVVPLA RHAGWDDVKA FAHAVARHMA ATLPERFTAT MGPRNRKGKI
FVDYLRNNRG ASTIAAYSVR ARPGLGVSVP IAWDELPDTT GAAQWTLANL HERLDALKHD
PWRAYAHVRQ RVTAALRKRL SDG