Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_A2988 |
Symbol | |
ID | 4904376 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009078 |
Strand | - |
Start bp | 2909311 |
End bp | 2912802 |
Gene Length | 3492 bp |
Protein Length | 1163 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640146091 |
Product | DNA ligase, ATP-dependent |
Protein accession | YP_001077017 |
Protein GI | 126458457 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase [COG3285] Predicted eukaryotic-type DNA primase |
TIGRFAM ID | [TIGR02776] DNA ligase D [TIGR02777] DNA ligase D, 3'-phosphoesterase domain [TIGR02778] DNA polymerase LigD, polymerase domain [TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGGGAA AACTCAGCGT GTACCGCAGC AGGCGGCGCT TCGGCGAAAC GCCGGAGCCC GAGGGCGCGC GGCGGTCGCC GCGCCGCACG AAAGGCGCGG GCCGCGCGGG CGACGAATCG AAGCGGCGCG CGCGCGGCGA TGCGGCGGCG TCGAGCCGCG GCGAGCGCGT CGCTCGCCGT GGCCGCGCGC AGCAGCCGGC GCCGGCGCGC GGCAGGTCCG CGCTTCATTA CGTGATCCAG GAGCATCACG CGCGTCGCTT GCATTACGAC TTTCGTCTCG AACTCGATGG CACGCTCAAA TCGTGGGCGA TCCCGAAAGG GCCGAGCCTC GATCCTTCGG TCAAGCGGCT CGCGGTGCAC GTCGAGGATC ATCCGCTCGA ATACGCGGCG TTCGAGGGCG AGATTCCGGA GGGCCATTAC GGCGCGGGCT CGGTGATTGT CTGGGATCGC GGCGCATGGA CGCCCGCCGG TGGCATCGCC GCCGCGCGCG CCGGCTATCG CGCGGGCAAG CTGAGCTTCA CGCTCGACGG GGACAAGCTG CACGGCGGCT GGGCGCTCGT GCGCGGCCGC GGGCTGCGTG ACAGCGGCGG CAAGCACGAG CAATGGCTGC TGATCAAGGA ACGCGACGGC GACGCGCGCG ACCAAGCGGA CTACGACGTG CTGCGCGCAC GGCCGGGCAG CGTGCTCGGC GGCGCGCGGT CCGCGCGGGC GAGGCGCGGG CGCGCGGCCG AGCCGACGGA GCGCGACGCC GCCGCGCCGA AGCGGGCGCG CGCTTCAGTG CCGAAAGGGC GCGCCGAAGC GAAGACGAGC GGGCGTGCGC CGCGCACCGT GTCGAACGGG ACTGCGGGCG CGGGTAAGGG CGCAAGCAAG CGTGCAAGCA AGCGCGAGGG CACGAATACC GGAAACGGCG CGAGAAGCGG CAAGGGCAGC GGCAAGGGCA GCGGCAAGGG CGCGGGCAAG GGCGCGGGCA AGGGCGGGGC CACACCGCGC CGCAAACGCG CCGCCGCGCC GCAGTCGTTC GACGTCGATT CGGCCGATAC CGATTCACCC GCGGCGCGCG GCCTCGCGTT GCCCGCCGGG CTTGCCGCGC GCTTCGGCCT GAGCGGCGCG AAGCGCGCGG CGCTGCCGCG CACGTTGCGG CCGCAACTGG CGACGCTCGT CGACGCGCCG CCGCCCGGCA AAGACTGGCT ATACGAAGCG AAGTTCGACG GCTACCGCGT GCTGATCCGG ATCGATCGCG GCGCGGCGTC CCGCCCGATT GCCGTCTACA CGCGCGAGGG GCTCGACTGG AGCGCGAAAT TCGCCGCGCA GCTCGACGCG CTCGCGCGCC TGCCGGTCGA CCGGGGCTGG CTCGACGGCG AGGCGGTCGT GCTCGATCGC GCGGGCGTGC CGGATTTCCA GGCGCTGCAG AACGCGCTCG GCGCCGGACG CTCGAACGAT GTCACGCTGT TCCTGTTCGA CGTGCCGTTC CTGAACGGCT TCGACCTGCG CGGCGTGCCG CTCGAACGGC GGCGCGCGCT GCTCGCCGCG CTCGTCGCCG CGCATGCGAG CGACGTGCTG CGTTACTCGG AGAGCCTCGC GTTCGAGGCC GCCGATCTGC TGACGGGCGC GTGCGACGCG GGGCTCGAAG GGCTGATCGG CAAGCGGCGC GATGGCCGGT ACGTCGAGGG GCGCTCGAGA TCGTGGATCA AGCTGAAGTG CCGGCGCAGG CAGGAGTTCG TGATTGGCGG CTACACGGAG CCGGCCGGAC GGCGCAGCGG ATTCGGCGCG TTGCTGCTCG GCGTGTACGC CCGGGCGCCG GGCGACGAGG GCGACGAGGG CGAACGAAGG ACGCGCGGCG CGGCCGAAAC GCGCGACGAG CGGCGTCGTG CATCCCACGC ATCCCGCACA TCCCGCGCGC CCGATGCCGG CGCGGCGCGC ACACCGCAGG CGCGGCCGCT CGCGTTGCGC TACGTCGGCC GCGTCGGCAC CGGCTTCGGC GAGCGCACGC TTCGCGCGCT CGCGCGGACG CTGCGCGAGC ACGAGACCGG GCGGATGCCG TTCGCGGACG TGCCGCGCGA GCGCAGCGGC ACGCCGGTTC ACTGGGTGAA GCCCGTGCTC GTCGCCGAAT GCGAATTCGC GGAATGGACG GGCGACGGCA TCGTCCGGCA GGCGTCGTTC GTCGGGCTGC GCGAAGACAA GCCGGCGCGC ACGATCGTTC GCGAGCAACC GCAATCCATG GAGACGGAAG CCATGAATGA ACACGCTGAC GAACATACGG ATGAACATAC CGATGCACGC GCCGAACGTC GCACCGGCGG ACGCACGCGG CGCAAAGCAC GTGACGGCGG CGCGCGCGAC GCGCCGCCGC TTGCCCGCCA TCCGAAGCGC GGCGATGCGG GATCGTCCGC GCGCAAGGGC GCGCGGGACG GGGAGGCGGG CAAGCGCGCC GCCGCGGGAT CGTCGCCTTC GTCTTCACCG TCGAGTTCGA CTTCGACTTC GATTTCGGCG TCAGGGCGCA CGCGCGGGGG CGGTCGTTCC GCCTCGCGCG ATCGAGCCGG CGATGCGGAC GAAGGCGCGA ACGAAGACGC GAACGATCAC GCGCCGCGCG AGCGCGCCGG CGCGCCGAAG GTGGCGGGCG TGCGCGTCTC GCATCCCGGC CGCGTGATCG ATCCGCACAC GGGCACGCGC AAGCTCGACC TCGTCGAATA CTGGGAATGG ATCGCGCCGT GGCTGCTGCC GCATCTGAAG GGCCGGCCGG TGTCGCTCGT GCGCGCGCCC GCCGACATCG GCAGCGAGCT GTTCTTCCAG AAGCACGCGG ACAAGCTGGA GATTCCGAAC GTCGCGCTGC ACCCGGGGCT CGACCCGGGC CATGAGGCGC TCATCACGAT CGACGATGTG AAGGGGCTCG TCGGCGCCGC GCAAATGGGC ACGATCGAGC TGCACACGTG GAACGCGCAC GTGTCGAACA TCGAGAAGCC GGACCGCGCG GTGTTCGACC TCGACCCGGA CCCGTCGCTC GACTGGCGCG CGGTGATCGA GGCCGCGCAG CTCACGCGCG CGCTGCTGGA CGAGCTCGGC CTCGTGTCGT TCTGCAAGAC GAGCGGCGGC AAGGGGCTGC ACGTCGTCGT GCCGCTCGCG CGCCATGCGG GCTGGGACGA TGTGAAGGCG TTCGCGCACG CGGTGGCGCG GCACATGGCG GCGACCCTGC CCGAGCGCTT CACCGCGACG ATGGGGCCGC GCAACCGGAA GGGCAAGATC TTCGTCGACT ATCTGCGCAA CAACCGCGGC GCGAGCACGA TCGCCGCGTA CTCGGTGCGC GCGAGGCCGG GGCTTGGCGT ATCGGTGCCG ATCGCATGGG ACGAACTGCC GGATACGACG GGCGCCGCGC AATGGACGCT CGCGAACCTG CACGAGCGTC TCGACGCGCT GAAGCACGAC CCGTGGCGCG CCTATGCGCA TGTGCGGCAA CGCGTGACGG CGGCGTTGCG GAAGCGGCTG AGCGATGGGT AG
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Protein sequence | MAGKLSVYRS RRRFGETPEP EGARRSPRRT KGAGRAGDES KRRARGDAAA SSRGERVARR GRAQQPAPAR GRSALHYVIQ EHHARRLHYD FRLELDGTLK SWAIPKGPSL DPSVKRLAVH VEDHPLEYAA FEGEIPEGHY GAGSVIVWDR GAWTPAGGIA AARAGYRAGK LSFTLDGDKL HGGWALVRGR GLRDSGGKHE QWLLIKERDG DARDQADYDV LRARPGSVLG GARSARARRG RAAEPTERDA AAPKRARASV PKGRAEAKTS GRAPRTVSNG TAGAGKGASK RASKREGTNT GNGARSGKGS GKGSGKGAGK GAGKGGATPR RKRAAAPQSF DVDSADTDSP AARGLALPAG LAARFGLSGA KRAALPRTLR PQLATLVDAP PPGKDWLYEA KFDGYRVLIR IDRGAASRPI AVYTREGLDW SAKFAAQLDA LARLPVDRGW LDGEAVVLDR AGVPDFQALQ NALGAGRSND VTLFLFDVPF LNGFDLRGVP LERRRALLAA LVAAHASDVL RYSESLAFEA ADLLTGACDA GLEGLIGKRR DGRYVEGRSR SWIKLKCRRR QEFVIGGYTE PAGRRSGFGA LLLGVYARAP GDEGDEGERR TRGAAETRDE RRRASHASRT SRAPDAGAAR TPQARPLALR YVGRVGTGFG ERTLRALART LREHETGRMP FADVPRERSG TPVHWVKPVL VAECEFAEWT GDGIVRQASF VGLREDKPAR TIVREQPQSM ETEAMNEHAD EHTDEHTDAR AERRTGGRTR RKARDGGARD APPLARHPKR GDAGSSARKG ARDGEAGKRA AAGSSPSSSP SSSTSTSISA SGRTRGGGRS ASRDRAGDAD EGANEDANDH APRERAGAPK VAGVRVSHPG RVIDPHTGTR KLDLVEYWEW IAPWLLPHLK GRPVSLVRAP ADIGSELFFQ KHADKLEIPN VALHPGLDPG HEALITIDDV KGLVGAAQMG TIELHTWNAH VSNIEKPDRA VFDLDPDPSL DWRAVIEAAQ LTRALLDELG LVSFCKTSGG KGLHVVVPLA RHAGWDDVKA FAHAVARHMA ATLPERFTAT MGPRNRKGKI FVDYLRNNRG ASTIAAYSVR ARPGLGVSVP IAWDELPDTT GAAQWTLANL HERLDALKHD PWRAYAHVRQ RVTAALRKRL SDG
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