Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_A2966 |
Symbol | |
ID | 4903629 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009078 |
Strand | + |
Start bp | 2889251 |
End bp | 2890618 |
Gene Length | 1368 bp |
Protein Length | 455 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640146069 |
Product | type II/IV secretion system protein |
Protein accession | YP_001076995 |
Protein GI | 126457824 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.265625 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCATTGC GAGACCAGAT GTCCGTGCGG CGCGCGCAAC CGCTCATGAC CCGAAGCGAC GCCATCGGCG CGGCCACCGC GATGGCGCGC GAAGCGTATC AGAAGCTGCG CCGCCAGATG CACGGCGCGG TGCTCGAGCG CGTCGAGCTC GAACGCCTGT CGCGGCTGCC CGCCGAACAG GTGCGCAACG AGATCGCGAC GCTGATCGCG CGCATTCTCG ACGAGGAGAA GCTGCTCGCG AACGATCTCG AACGCCGCCA GTTGACGATC GACATCTACG ACGAAATGTT CGGCTTCGGC CCGCTCGAAT CGCTGCTGCG CGACCCGAGC GTGTCGGACA TCCTCGTCAA CACGGCGAGC GCCGTCTACG TCGAGCGCTA CGGCCGGCTC GAGCTGACCG ACGTGACGTT CTACGACGAC GCTCACCTGA TGAAGGTGAT CGAGAAGATC GTCTCGCGCG TCGGCCGGCG CATCGACGAA TCGAGCCCGA TGGTCGACGC GCGCCTGCCC GACGGCTCGC GCGTGAACGC GATCATCCCG CCGTCCGCGA TCGACGGCCC GCTGATGTCG ATCCGCCGCT TCGCCGTCAA TCCGCTGAAG ATGGACGATC TCGTCAACTT CCAGACGTTG ACGCCGCCGA TGGCGCAACT GCTCGAGGCG CTCGCGCGCG CGAAGGTCAA CGTGCTCGTG TCGGGCGGCA CCGGCAGCGG CAAGACGACG CTCCTGAACA TCCTGTCGGG CTTCATTCCG GACGACGAAC GGATCGTGAC GATCGAGGAC GCGGCGGAGC TGCAGCTTCA ACAGCATCAC GTGCTGCGGC TCGAGACGCG CCCGCCGAAC ATCGAGGGCA AGGGCGAGAT CACGCAGCGC ACGCTCGTGC GCAACGCGCT GCGCATGCGG CCCGACCGCA TCATCCTCGG CGAAGTGCGC GGCGCGGAGG CGCTCGACAT GCTGAACGCG ATGAACACCG GCCATGAAGG CTCGCTCGCG ACGATCCACG CGAACACGCC GCGCGACGCG CTCACGCGGC TCGAGAACAT GATCGGCGTC GCGGGCCTCG CGCTGCCGCC GAAGACGATG CGCCAGCAGA TCAGCTCGGC GCTGTCCGTC GTCGTGCAGA CCGCGCGGCT CACCGACGGC AAGCGCAAGA TCATCAGCAT CCAGGAGCTG ACCGGCATGG AGGGCGAGAT CATCAACATG CAGGAGATCT TCACGTTCAA GCGCACCGGC CTCGACGCGA GCGGCAACGT GCTCGGCTAC TTCACCGCGA CGGGCGTGCG GCCGAAGTTC ACCGAGCGCC TGACCGCGTT CGGCATCCAG TTGCCCGACG CGATGTACGA CCCCGCGCGC CGCTTCGAAG TGGCGTAA
|
Protein sequence | MSLRDQMSVR RAQPLMTRSD AIGAATAMAR EAYQKLRRQM HGAVLERVEL ERLSRLPAEQ VRNEIATLIA RILDEEKLLA NDLERRQLTI DIYDEMFGFG PLESLLRDPS VSDILVNTAS AVYVERYGRL ELTDVTFYDD AHLMKVIEKI VSRVGRRIDE SSPMVDARLP DGSRVNAIIP PSAIDGPLMS IRRFAVNPLK MDDLVNFQTL TPPMAQLLEA LARAKVNVLV SGGTGSGKTT LLNILSGFIP DDERIVTIED AAELQLQQHH VLRLETRPPN IEGKGEITQR TLVRNALRMR PDRIILGEVR GAEALDMLNA MNTGHEGSLA TIHANTPRDA LTRLENMIGV AGLALPPKTM RQQISSALSV VVQTARLTDG KRKIISIQEL TGMEGEIINM QEIFTFKRTG LDASGNVLGY FTATGVRPKF TERLTAFGIQ LPDAMYDPAR RFEVA
|
| |