| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_A2623 |
|---|
| Symbol | |
|---|
| ID | 4905069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009078 |
|---|
| Strand | - |
|---|
| Start bp | 2565184 |
|---|
| End bp | 2566668 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 640145726 |
|---|
| Product | NodT family efflux transporter outer membrane lipoprotein |
|---|
| Protein accession | YP_001076653 |
|---|
| Protein GI | 126458428 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.193044 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGTACAT CGCATCCGGC TAGCCGCCCG CGCGGGGGGC GGCCGCGCCT CGCCGCGATC
GCGCTCGGCT GCGCGGCGCT CGTCGCCGGT TGCGCGGTGG GGCCCGACTT CATCGCGCCC
GCGCGGCCTG CCGTCGATGC GTACGTGCCG GACGGCGCCG CGCGCACGCG TTTCGCCGCG
AGCGACGCGA CGCAGACGCT CGCACCCGAC GCGCCGTTTC CCGACGCATG GTGGCGGCTG
TTCGGCTCGC GCGAGATCGA CGCGGCCGTT GACGACGCGT TCGCGGGCAG CCCGACGCTC
GCGCGCGCGC GGGCGACGCT CGCTCGCAGC GAGCACGCGT TGATCGCGGG CGCGGGCGTG
TTCTATCCGC AGGCCGACGC GCAGGCGGGC GCGTCGCGGC AGCGCTACGT GCCGTTGCGC
ACGGGCGCGA ATCTGCCGGC GTCGCTCTTC AATCTGTTCA CGCTGTCGAC GACGGTCAGC
TATGCGCTCG ACCTGTGGGG CGGCGAGCGG CGCCATGTCG AAGGGCTCGC CGCGCAAGCC
GACGCGCAGC GCCACGCGCT CGCGGCAGCG CGCCTCACGC TCGCGGCGAA CGTCGTCAAC
ACGATGATCG CGCGCGCCGC GTATGCGGAC GAGATCGCGC TCACGCGCGA GCTGATCGCG
CTGACCGACG AGCAGATCCG GCTGACGCGC GCGCAGGTGA GCGCCGGCAC GAGCGCATAC
ACGGCCGTGC TCGCGCTCCA GGCGGCGCGC GCGTCGCTCG ACGCGTCGCT GCCCGCGCTC
GAGCAGAAGA CCGGCGAGGC CGACGATCTG CTCGCGACGC TCGCGGGCCG CTACCCGGCC
GAGCACGTGC CGCCGCAAGT GTCGCTCGCC GCCATCGCAT TGCCGGCGCG GCTGCCGCGG
ACGGTGCCGT CCGAGCTCGT GCGCCGCCGC CCCGACATCC TGCAGGCGGA GGCGGTGCTG
CATGCGGCGA GCGCGAACAT CGGCGTGGCG AGCGCGGCGC TGTTTCCGAG CGTCACGCTA
TCGGCGTCGG GCGGCTTCGA CGCGACGCGC GCGAGCGCGC TGTTCGGCCC GGCGGGCAGG
GCGTGGAGCG TCGGCGCATC GATCACCGCG CCGCTCTTTC ATGGCGGCGC GCTCTGGTAT
CAGCGCAAGG CCGCGGTCGA CGCGTTCGAC GAATCGAACG CCGCGTATCG GCAAACGGTG
CTGAGCGCGT TCGCGCAGGT CGCCGATACG TTGAGGGCGC TCGATCACGA CGCGACGGCG
CTCGACGCGC AAGCGCGCGC GATGAGCGCG GCGCGCGATG CGCGGCGGCT CGCGACGGTC
CAGTACGAGG CGGGCACGGC CGGCTATCTG CAGGTGCTGC TCGCCGATCA GCAATATCGG
CAGGCGCGGC TCGCGTGGGT GCAGGCGAGC GCGCAGCGGC TGCAGGACAC GGTCGCGCTG
TACGCGGCGC TCGGCGGCGG GTGGGGCGGC GCGCGGCAAC CCTGA
|
|---|
| Protein sequence | MCTSHPASRP RGGRPRLAAI ALGCAALVAG CAVGPDFIAP ARPAVDAYVP DGAARTRFAA
SDATQTLAPD APFPDAWWRL FGSREIDAAV DDAFAGSPTL ARARATLARS EHALIAGAGV
FYPQADAQAG ASRQRYVPLR TGANLPASLF NLFTLSTTVS YALDLWGGER RHVEGLAAQA
DAQRHALAAA RLTLAANVVN TMIARAAYAD EIALTRELIA LTDEQIRLTR AQVSAGTSAY
TAVLALQAAR ASLDASLPAL EQKTGEADDL LATLAGRYPA EHVPPQVSLA AIALPARLPR
TVPSELVRRR PDILQAEAVL HAASANIGVA SAALFPSVTL SASGGFDATR ASALFGPAGR
AWSVGASITA PLFHGGALWY QRKAAVDAFD ESNAAYRQTV LSAFAQVADT LRALDHDATA
LDAQARAMSA ARDARRLATV QYEAGTAGYL QVLLADQQYR QARLAWVQAS AQRLQDTVAL
YAALGGGWGG ARQP
|
|---|
| |