Gene BURPS1106A_A2392 details

Gene Information

• Locus tag: BURPS1106A_A2392
• Symbol: dxs
• ID: 4904450
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1106a
• Kingdom: Bacteria
• Replicon accession: NC_009078
• Strand: -
• Start bp: 2368637
• End bp: 2370541
• Gene Length: 1905 bp
• Protein Length: 634 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 640145497
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_001076424
• Protein GI: 126456504
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTACGACT TGCTGAAAAC CATCGACGAT CCGGCGGACC TGCGCCGTCT CGATCGTCGC 
CAACTGCAGC CGCTCGCCGA CGAGCTGCGC GCGTTCGTCC TCGACAGCGT GTCGAAGACG 
GGCGGCCATT TGTCGTCCAA TCTCGGCACG GTCGAGCTGA CGATCGCGCT GCATTACGTG 
TTCAATACGC CGGACGACCG GATCGTGTGG GACGTCGGTC ACCAGACCTA TCCGCACAAG 
ATCCTGACGG GCCGCCGCGA CGGGATGAAG ACGCTGCGCC AGTTCGACGG CATCTCGGGC 
TTTCCGCGCC GCTCGGAATC CGAATACGAC ACGTTCGGCA CCGCACACTC GAGCACGTCG 
ATCTCGGCCG CGCTCGGGAT GGCGATCGGC AGCAAGCTGA ACGGCGACGA CCGCTTCTCG 
ATCGCGGTGA TCGGCGACGG CGCGATGACG GCCGGCATGG CGTTCGAGGC GATGAACAAC 
GCGGGCGTGT CGGAGGACGC GAAGCTGCTC GTGATCCTGA ACGACAACGA CATGTCGATC 
TCGCCGCCCG TCGGCGCGCT GAATCGCCAT CTCGCGCGCC TGATGTCGGG CCGCTTCTAC 
GCGGCCGCGC GTGCGGGCGT GGAGCGCGTG CTGAGCGTCG CGCCGCCCGT GCTGGAGCTC 
GCGCGCAAGC TCGAGGAGCA TGCGAAGGGC ATGGTCGTGC CGGCCACCCT CTTCGAGGAA 
TTCGGCTTCA ACTACATCGG GCCGATCGAC GGCCACGATC TCGATTCGCT GATCCCGACG 
CTGCAGAACA TCAAGGAGCT GCGCGGGCCG CAGTTCCTGC ACGTCGTGAC GAAGAAGGGC 
CAGGGCTACA AGCTCGCCGA GGCCGACCCG GTGCTCTATC ACGGGCCCGG CAAGTTCAAC 
CCGGCGGAAG GCATCAAACC GTCGACGACG CCCGCGAAGA AGACCTACAC GCAAGTGTTC 
GGCGAATGGC TGTGCGACGC GGCGGAACTC GATGCGCGCG TGGTCGGCAT CACGCCCGCG 
ATGCGCGAAG GCTCGGGCAT GGTCGAGTTC GAGAAGCGCT TCCCGGAGCG CTACTACGAC 
GTCGGCATCG CCGAGCAGCA CGCGGTGACG TTCGCGGGCG GCCTCGCGAC GGAAGGGCTC 
AAGCCTGTCG TGGCGATCTA TTCGACGTTC CTGCAGCGCG CTTATGATCA GCTGATTCAC 
GACGTCGCGC TGCAGAACCT GCCCGTCGTG TTCGCGATCG ACCGCGCGGG CCTCGTCGGC 
GCGGACGGCG CGACGCACGC GGGCGCGTAC GATCTCGCGT TCCTGCGCTG CATTCCGAAC 
ATGACGGTGA TGGCCGCGTC GGACGAGAAC GAGTGCCGCC AGATGCTGCA TACCGCGCTG 
CAACAGCCGA ACCCGACCGC CGTGCGTTAT CCGCGCGGCG CGGGCACGGG CGTTGCCACC 
GTCAAGGCGT TTACCGAGAT CCCGCTCGGC AAGGGCGAAG TGCGCCGCCG CACGTCGCAG 
CCGGACGGCA AGCGCATCGC GATTCTCGCG TTCGGCACGA TGGTGGCGCC GTCGCTCGCG 
GCGGCCGACG CGCTTGACGC GACCGTCGCG AACATGCGCT TCGTGAAGCC GATCGACGCC 
GAGCTCGTGC AAGCGCTCGC GCGGACGCAC GACTACCTCG TCACCGTCGA GGAAGGCTGC 
GTGATGGGCG GCGCGGGTTC CGCATGCGTC GAGGCGATGA TGGAAAGCGG CGCCGTCCGC 
CCGGTGTTGC AGCTCGGCTT GCCGGACCGT TTCGTCGATC ACGGCGATCC GGCGAAGCTG 
CTGTCGCTGT GCGGCCTCGA CGGCGACGGC ATCGCCAAAT CGATTCGCGA ACGCTTCCTG 
AGCCACGCGG CTGACGTCGC GAGCCCGGCG AAGCGCGTCG CATAA 

 

Protein sequence

MYDLLKTIDD PADLRRLDRR QLQPLADELR AFVLDSVSKT GGHLSSNLGT VELTIALHYV 
FNTPDDRIVW DVGHQTYPHK ILTGRRDGMK TLRQFDGISG FPRRSESEYD TFGTAHSSTS 
ISAALGMAIG SKLNGDDRFS IAVIGDGAMT AGMAFEAMNN AGVSEDAKLL VILNDNDMSI 
SPPVGALNRH LARLMSGRFY AAARAGVERV LSVAPPVLEL ARKLEEHAKG MVVPATLFEE 
FGFNYIGPID GHDLDSLIPT LQNIKELRGP QFLHVVTKKG QGYKLAEADP VLYHGPGKFN 
PAEGIKPSTT PAKKTYTQVF GEWLCDAAEL DARVVGITPA MREGSGMVEF EKRFPERYYD 
VGIAEQHAVT FAGGLATEGL KPVVAIYSTF LQRAYDQLIH DVALQNLPVV FAIDRAGLVG 
ADGATHAGAY DLAFLRCIPN MTVMAASDEN ECRQMLHTAL QQPNPTAVRY PRGAGTGVAT 
VKAFTEIPLG KGEVRRRTSQ PDGKRIAILA FGTMVAPSLA AADALDATVA NMRFVKPIDA 
ELVQALARTH DYLVTVEEGC VMGGAGSACV EAMMESGAVR PVLQLGLPDR FVDHGDPAKL 
LSLCGLDGDG IAKSIRERFL SHAADVASPA KRVA