| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_A2342 |
|---|
| Symbol | |
|---|
| ID | 4905341 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009078 |
|---|
| Strand | - |
|---|
| Start bp | 2323518 |
|---|
| End bp | 2325182 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640145448 |
|---|
| Product | HlyB family hemolysin activator protein |
|---|
| Protein accession | YP_001076376 |
|---|
| Protein GI | 226830801 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2831] Hemolysin activation/secretion protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTGT TGCTGGCGGG CCGCTCGGCG CCGGCAAGCG CGTTCGGGCC GACGGTGCAG
GACCGGGAGC GGGATCTGGG GGAGAAGGCG CGACGGCAGC GGATGATCGA ACAGCATAGG
CGGGGGCATG CGGCCGAGCC GGCGGCCGGG TTGCCGGCGC CAGTGCAAGC ACCCGAGTTG
GGCGGTGCGC GTTTCCCGAT CACGCAAATC GAAGTGCGGG GCGGGGTGCG CCATAGCCGG
GAGATCGACC GGATTGTCGA GCGCTACCGG GGCGCGACCA TGGGGCAGGC GGAGATTTTC
GCGCTGTTGC GTGATCTGAT GAATTTCTAC TATGGCCGCG GTTATATCAC GACCGGCGTG
TCGCTCGCCG AGCAAAACCT GTCGAGCGGG AAGCTGATCG TGGTGGTCCA TTGGGGCTAC
GTGAAGGGAT GGCGCGTGAA CGGCAAGGCG CCGGAGGGCA TGCGCGAGCG GTTGATGTTG
AGCAGCGCGA TGCCTGGCAT AGAAGGTTCC GTTTTGAACA TCCACGATAT CGACCAGGCG
ATCGAGAATC TGAACGGCTT GGGCAGAGCC GCCAAGATCA ACGTCGTCCC CGCCGAGGAA
GCCGGGTATT CCTATCTGGA CGTCGTTTTG CAACGCTCGA AGCCGTTCGC GGTGTCGGCG
TCGGTCGATA ACTCGGGTCT CGGCGATCGA GCGGGCGACG GCTTATACCG GTATGGCGTC
GATATCGCGG TGGCGCACCT GCTGGGCTGG AACGACGTGC TGACGCTCTC GGCCGGCCGT
CGCTACTACC AGGACCCCGC CCATCATGCC TACGATTCGC TGGCCGTGTC ATACGGATGG
CGCGTGGGCC GCTGGAGCGC CGATCTGCGG TATATCGCGC AGCCGACCAA AAGCCTCCTT
TCCGGAACCT ATGGTGACTA CCAACTGAGC GGCAATACGC AGGATGTCAA CCTGCGCGTG
TCGCGCGTGC TTCGGCGCTG GCGGACCGGC ACGGATGCCG TCTACGTTGC GATCGACCGC
AAGCGCGTGC GCAACTATAT CGACGACACG CTGATCGAGA TCAACAGCAA CACCCATACG
AGCGTCACGG CGGGAGTCAA TCGGCTGGAC AGTCTGTTCG GCGGAGTCGT ATTCGCGGAT
GGGGGCTGGA CGAGGGGCGT GGGCTGGCTG GGGGCGAGCG AGGACCCAGT GTCCGCCGGG
CAAGGGCCGC TGTCGCGTTA CGACAAATTC AATCTGAACC TGAACTGGTC GCGCGACTTC
ACGGCGGGCT CGTTGCGAGC CCGTTACACG GCGGCGATGG GGGCGCAGTA TTCGAAGGAT
GACCTGTACT ACGACAGCAA GTTCGTCATT GGCGACCAGT ACACGGTGCG CGGCTTCAAG
ATCCGGTCTG CCTATGGGGA TAGCGGCGTG TCTGTATCGA ACACGCTGAG CTTTCCGTTT
CCGACGTCGA TCGGAACGGT CACACCGTTG GTCGGTGTGG ATTGGGGGGG CGTCGGGAAC
AACGGCGAAG CGGGCAATGG CGGCTGGATC GGCGCAGTTG CGGGCGGGCT CCGGGTGTCG
ACGAAATGGG CCAATGCGGC GGTGACCATC GGCAAGCCGT TCAGGGCGCT GCCGGGCATG
GGGTACGGGG TGGTCTGGTA TTTGAGCGCA TCAGCCACGT ATTAG
|
|---|
| Protein sequence | MTVLLAGRSA PASAFGPTVQ DRERDLGEKA RRQRMIEQHR RGHAAEPAAG LPAPVQAPEL
GGARFPITQI EVRGGVRHSR EIDRIVERYR GATMGQAEIF ALLRDLMNFY YGRGYITTGV
SLAEQNLSSG KLIVVVHWGY VKGWRVNGKA PEGMRERLML SSAMPGIEGS VLNIHDIDQA
IENLNGLGRA AKINVVPAEE AGYSYLDVVL QRSKPFAVSA SVDNSGLGDR AGDGLYRYGV
DIAVAHLLGW NDVLTLSAGR RYYQDPAHHA YDSLAVSYGW RVGRWSADLR YIAQPTKSLL
SGTYGDYQLS GNTQDVNLRV SRVLRRWRTG TDAVYVAIDR KRVRNYIDDT LIEINSNTHT
SVTAGVNRLD SLFGGVVFAD GGWTRGVGWL GASEDPVSAG QGPLSRYDKF NLNLNWSRDF
TAGSLRARYT AAMGAQYSKD DLYYDSKFVI GDQYTVRGFK IRSAYGDSGV SVSNTLSFPF
PTSIGTVTPL VGVDWGGVGN NGEAGNGGWI GAVAGGLRVS TKWANAAVTI GKPFRALPGM
GYGVVWYLSA SATY
|
|---|
| |