Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_A2165 |
Symbol | |
ID | 4904656 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009078 |
Strand | - |
Start bp | 2118389 |
End bp | 2120188 |
Gene Length | 1800 bp |
Protein Length | 599 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640145270 |
Product | YscC/HrcC family type III secretion outer membrane protein |
Protein accession | YP_001076198 |
Protein GI | 126457187 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGGCCA AGATTCCCGT TTTGCTGTCC CTGCTGTGCT CGCTCGCGAG CCTTTCCGTC GACGCCGCGC CGATCCGCTG GCGCAGCGCC GACATCCAGT ACGCGGCCGA GGGCAAGGAC GTGAAGGACG TGCTGCGCGA TCTCGCCGCG AGCCAGAACA TCGCGGCGAA CGTCGCGCCC GGCGTGAGCG GCGCGGTGAG CGGCAAGATG AAGATGTCGC CGCAGCGCTT TCTCGACACG CTCGCCGCGT CGTTCGGCTT TGTCTGGTAT TACGACGGCA CCGTGCTGTA CGTGACGCCC GCGAGCGACA TGAAGAGCAC GCTCGTCAAG CTCGATCACG CGAACACGGG CGACCTGCGC GACCTGCTCG AGCAGATGAA GGTCGCCGAT TCGCGCTATC CGATCACCTA CAACGCGCAG CAGCGCACCG CGCTCGTCGC GGGGCCGGCG CGCTACGTCG AGCTCGTGAC GAGCGTCGCC GCGCGGCTCG ACGAGAATTC CGCGCGCACG GGCGGCACGC AGATCCGCGT GTTCTCGCTG AAGCACGCAT GGGCCGCGGA TCGCGACGTG AACGTCGACG GCACGGCGGT ATCGATGCCG GGCGTGGCTT CGCTGCTGAA CCGGATGTAT CACCCGGGCG AAGGCAAGCG CGCATCGCAG ACGACGCTCG GCAAGCCGAT CAGCCGCGCC GCGCCGATGA CGGATCTCGG CGGCGGGCGC AGCGGCGTGC CGCCGCTGCC GCCGTACATG CAGGCCGCGC AGTCGGGCGA CGGCGCGGCC ATGCCGGCGG GCGTGCCCGG CGTGCCCGGC GGCGATCCGC GCCCGAGCGG CATGGTCGCC GCCGCGATCG CGAATCCGGG CGCGGCGCGC GCGCCGGGCG GCGGGATGCC CGATGCGAAC GGCGTGCCCG CCGGCGCGGG CGACGCGGCG GATCTGCCGG TGATCCAGGC CGATCCGCGC ACGAACTCGA TCCTCGTGCG CGACGTGCCC GAGCACATGG CGCAGTATCC GGACCTGATC GCGCTCCTCG ACGTGAAGCC GCGCCTGATC GAGATCGAGG CGCGCATCAT CGAGATCGAC GAAGGCGCGC TCAAGCAGCT CGGCGTCGAC TGGCGCGCGC ACAACAGCCA TTTCGACCTG CAGACGGGCA CGGGGCTCAC GTCGCAGAAC GGCTATGCGA ACGGCACGCT GAACCCCACG TTCGGCTCGA TCACGCTCTC CGGCAACGAT TCGGTCGGCG TGCCGGCGAG CCCGCTCGGG CTGTCGCTGA CGGCCGTGCT CGGCGACGCC GGCCGCTATC TGCTCGCGCG GATCAACGCG CTCGAATCGT CGAACCAGGC GCGCACCGAC GCGAGCCCGA AGGTCACGAC GCTCGACAAC GTCGAGGCGG TGATGGACAA CAAGAAGCAG TTCTTCGTGC GCGTGGCGGG CTACACGTCG GCCGACCTGT ACAGCATCTC GACGGGCGTG TCGCTGCGCG TGCTGCCGAT GGTCGTCGAC GAAGGCGGGC GCACGCAGAT CAAGCTCGAC GTGCGGATCG TCGACGGCGA GCTGTCGCAG CAGACGGTCG ACAACATTCC GGTGATCGTG TCGAACGAGA TCAACACGCA GGCGTTCATC GAGCAGGGGC AGGCGTTGCT GATCGCGGGC TACAAGGTGG ATGCGCGCTC GAGCACGCAA TCGGGGGTGC CGGTGCTGTC GAAGCTGCCG CTCGTCGGCG CGCTGTTTCG TTCGACCGAC AAGCAGAACA GCCACAGCGA GCGGCTCTTT CTCGTGACGC CGAGAGTGAT CGAGCCTTGA
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Protein sequence | MKAKIPVLLS LLCSLASLSV DAAPIRWRSA DIQYAAEGKD VKDVLRDLAA SQNIAANVAP GVSGAVSGKM KMSPQRFLDT LAASFGFVWY YDGTVLYVTP ASDMKSTLVK LDHANTGDLR DLLEQMKVAD SRYPITYNAQ QRTALVAGPA RYVELVTSVA ARLDENSART GGTQIRVFSL KHAWAADRDV NVDGTAVSMP GVASLLNRMY HPGEGKRASQ TTLGKPISRA APMTDLGGGR SGVPPLPPYM QAAQSGDGAA MPAGVPGVPG GDPRPSGMVA AAIANPGAAR APGGGMPDAN GVPAGAGDAA DLPVIQADPR TNSILVRDVP EHMAQYPDLI ALLDVKPRLI EIEARIIEID EGALKQLGVD WRAHNSHFDL QTGTGLTSQN GYANGTLNPT FGSITLSGND SVGVPASPLG LSLTAVLGDA GRYLLARINA LESSNQARTD ASPKVTTLDN VEAVMDNKKQ FFVRVAGYTS ADLYSISTGV SLRVLPMVVD EGGRTQIKLD VRIVDGELSQ QTVDNIPVIV SNEINTQAFI EQGQALLIAG YKVDARSSTQ SGVPVLSKLP LVGALFRSTD KQNSHSERLF LVTPRVIEP
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