Gene BURPS1106A_A2087 details

Gene Information

• Locus tag: BURPS1106A_A2087
• ID: 4906079
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1106a
• Kingdom: Bacteria
• Replicon accession: NC_009078
• Strand: -
• Start bp: 2050986
• End bp: 2052863
• Gene Length: 1878 bp
• Protein Length: 625 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 640145192
• Product: YscC/HrcC family type III secretion outer membrane protein
• Protein accession: YP_001076120
• Protein GI: 126457615
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1450] Type II secretory pathway, component PulD
• TIGRFAM ID: [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGTATG CCGACACGGC CAGACGATAC GCAGCCGCGC TTGCCGCGTC GCTGCTGATG 
ACGGGCGCGG CGTTCGCCGC GCCGACCGAC GCGGCGCCGC TCGCCGACGC GCCCGCGGCG 
GCGAGCGCGA CGCCCGACGC ACGGGACGGC GACGCGTCGC GCGTGGCCGC GCCGCCGGCG 
CGCGCGCCGC AGGACGACGA GCGCCACTTC GTCGCGAACG ACGCGAGCAT CAGCGTGCTG 
CTCAATGCGC TGTCGGGCCG GCTGCACAAG CCGATCGTCG CGAGCGAGAA GGTGCGCCGC 
AAGCACGTGA CGGGCGAGTT CGACCTCGCG CAGCCCCGCG CGCTGCTCGC GCGGCTCGGC 
GAATCGATGT CGCTGCTCTG GTACGACGAC GGCGCGTCGA TCTACATCTA CGACAACTCG 
GAGATCAAGA ACGCGGTCGT CTCGATGCGC CATGCGACGG TGCGCAACCT GCGCGATTTC 
ATCCGGCAGA CGCGGCTCTA CGATCCGCGC TTTCCGGTGC GCGGCGACGA CCTGAGCAAC 
ACGTTCTACG TGACGGGCGC GCCCGTCTAC GTGAATCTCG TCGCCGCCGC CGCGCGCTAT 
CTCGACGAGG TGCGCTCGAA CGAGGCGAGC GACCGGCAGG TCGTGCGCGT CGTGCAGCTT 
CACAACAGCT TCGTCGTCGA CCGCCAGTAC ACGCTGCGCG ACAAGGAAGT CGACATCCCG 
GGCATGGCGA CCGTGCTCGG CCGCATCTTC GGCCCGGCGC GGCCGGGCGC GCCGGCGGAC 
TCGCCCGTCG CGGCGGCCGA CGCCACGGCG CGCGGCGGCG CGGGCGGCGC GGCGGGCAAG 
CCGGCGTTCT CGCTTGCCGA TGCGTTGCCC GCGCCGCTCG ACGCCGGCAA CGCGCCGGGC 
GGCGCGGGCT CGACGCATTC GACAAACCCG GCGAACGCCG CGAGCCCGAT GGGCGGCGCG 
GCGGGCGGCG TCGCGCTGCC CGCGTCGGAC GGCGTGCGCG CGGTGGCGTA TCCGGACACG 
AACAGCGTGA TCCTCGTCGG CCGGCTCGAC AAGGTGCAGG ACATGGAGGC GCTGATCCGC 
TCGCTCGATG TCGAGAAGCG GCAGATCGAG CTGTCGCTGT GGATCATCGA CATCCGCAAG 
AGCCGGCTCG ATCAGCTCGG CATCGACTGG CAGGGTGCGC TCAATGCGCC GGGTATCGGC 
GTCGGCTTCA ACAATCGCGG CGGCAACGTG ACGACGCTCG ACGGCACCAG GTTCCTCGCA 
TCGGTCGCGG CGCTCAGCCA GACGGGCGAC GCCACCGTGA TCTCGCGGCC GATCGTGCTC 
ACGCAGGAGA ACGTGCCGGC GACGTTCGAC AGCAACCAGA CGTTCTACGC AAAGCTGATC 
GGCGAGCGCA CGGTGCAGCT CGATCACGTG ACCTACGGCA CGCTCGTCAA CGTGCTGCCG 
CGGCTCACGC GCGATGGGTC GCAGGTCGAG ATGATCGTCG ACATCGAGGA CGGCAACACC 
GACGGCGCGA CGAGCGACGG CCAGATCGTC ATCGACAACA ACACGATGCC GCTCGTGAAC 
CGCACCGAGA TCAACACGGT CGCGCGCGTG CCGCACGAGA TGAGCCTGCT CATCGGCGGC 
AACACGCGCG ACGACGTCAC GCGCCGCACG TTCCGGATTC CCGGGCTGGC CAGCATTCCG 
CTGATCGGCG GGCTGTTTCG CGGGCATTCG GATCGGCACG AGCAGGTGGT GCGCGTGTTC 
CTGATCCAGC CGAAGCTGCT GCGCGCGGGC GCGGCCTGGC CCGACGGCCA GCCGTGGGAA 
TCGGGCGATC CGGCGGACAA CGCGACGCTG CGCGCGACCG TGCAGATGCT CAAACCCTAC 
ATGGACGACA AGTCATGA 

 

Protein sequence

MMYADTARRY AAALAASLLM TGAAFAAPTD AAPLADAPAA ASATPDARDG DASRVAAPPA 
RAPQDDERHF VANDASISVL LNALSGRLHK PIVASEKVRR KHVTGEFDLA QPRALLARLG 
ESMSLLWYDD GASIYIYDNS EIKNAVVSMR HATVRNLRDF IRQTRLYDPR FPVRGDDLSN 
TFYVTGAPVY VNLVAAAARY LDEVRSNEAS DRQVVRVVQL HNSFVVDRQY TLRDKEVDIP 
GMATVLGRIF GPARPGAPAD SPVAAADATA RGGAGGAAGK PAFSLADALP APLDAGNAPG 
GAGSTHSTNP ANAASPMGGA AGGVALPASD GVRAVAYPDT NSVILVGRLD KVQDMEALIR 
SLDVEKRQIE LSLWIIDIRK SRLDQLGIDW QGALNAPGIG VGFNNRGGNV TTLDGTRFLA 
SVAALSQTGD ATVISRPIVL TQENVPATFD SNQTFYAKLI GERTVQLDHV TYGTLVNVLP 
RLTRDGSQVE MIVDIEDGNT DGATSDGQIV IDNNTMPLVN RTEINTVARV PHEMSLLIGG 
NTRDDVTRRT FRIPGLASIP LIGGLFRGHS DRHEQVVRVF LIQPKLLRAG AAWPDGQPWE 
SGDPADNATL RATVQMLKPY MDDKS