Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_A2027 |
Symbol | |
ID | 4903997 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009078 |
Strand | + |
Start bp | 1995159 |
End bp | 1995668 |
Gene Length | 510 bp |
Protein Length | 169 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640145132 |
Product | hcp protein |
Protein accession | YP_001076060 |
Protein GI | 126457376 |
COG category | [S] Function unknown |
COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGGCCG GAATATATCT CAAGGTCAAA GGAAAAACCC AGGGGGAAAT CAAAGGCTCC GTCGTTCAGG AAGGTCATGA CGGGAAAATC CACATCCTCG CCTTCAAGAA CGACTACGAC ATGCCTGCCA GGCTCCAGGA AGGCCTGACG CCCGCCGCCG CCGCTCGCGG CACGATCACG TTGACGAAGG AAATGGACAG ATCGTCGCCG CAATTCCTGC AGGCGCTCGG CAAGCGCGAG ATGATGGAAG AGTTCGAGAT CACGATCCAC CGTCCGAAGA CGGATACAAC AGGTGGGGAC CTGACCGAAC TCCTGTTCAC GTACAAGTTC GAAAAAGTGC TGATCACCCA CATGGACCAA TACTCGCCCA CGCCGCACAA AGACGATAGC AACGGCATCA AGGAAGGCTT GCTCGGCTAT ATCGAGGAGA TCAAGTTCAC GTATTCGGGA TACTCGTTGG AACACGCGGA ATCGGGCATC GCGGGCGCCG CAAACTGGAC GAATGGCTGA
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Protein sequence | MLAGIYLKVK GKTQGEIKGS VVQEGHDGKI HILAFKNDYD MPARLQEGLT PAAAARGTIT LTKEMDRSSP QFLQALGKRE MMEEFEITIH RPKTDTTGGD LTELLFTYKF EKVLITHMDQ YSPTPHKDDS NGIKEGLLGY IEEIKFTYSG YSLEHAESGI AGAANWTNG
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