| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_A1949 |
|---|
| Symbol | |
|---|
| ID | 4903862 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009078 |
|---|
| Strand | + |
|---|
| Start bp | 1910791 |
|---|
| End bp | 1912587 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640145055 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001075983 |
|---|
| Protein GI | 126455773 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.411479 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGTTC ATTCCGATCG TTTCGCCGCC ATCCAGATGC AACTGAAGCA AGGCGACCTG
ATTGCCGCCG CCGATGCGAT CGACGCGTGG CGCGCGGCCG AGCCCGCGTC CGCCGACGCG
CTCGCCTGCC GCGCGCACTG GCTGCGCCTG CTCGGCCGCT TCGACGAAGC GGCGGCCGCG
CTCGAGCCGG CGCTCGCCGC GACGCCGCCG TGCGCGACCG CGTGGGCCGA GCGCGCGCGC
CTCGACCGGC TCGCCGGGCA AGCCGAGCGC GCGCACGCCG CGTTCGACGC CGCGCATCGC
GCCGATCCGG CCGCGACGGC ATGGCTCGCC GAATGGATCG AACTGCTGCA CCCGCTCCAT
CGTCCCGCGC TCGCGCTGCC GGTTGCGCAG GCGCTGTGCG AGCACGCGCC GGACAGTGCG
CAGTCTTGGT TTCTGCTCGG CCTCACGCAC CACTACGCGG GCGACTACGC GGCGGCGGCC
GCTGCATACC GTCGCGCGGA TGCACTCGAT CCGGCCTATC CGATGTTGCG CAACAATCTC
GCCGCGCTTC GCTATCAGAC CGGCATGACC GCCGAGGCGC TCGCGCTGGC GGAAGCGGCG
ATTCGCGCGG AGCCGGACAA CCAGATGGCG TGGTGCAACT GCTCGAATGC GTGGCTCGCG
CTGCGCGAGC CGGCACGCGC GCTGATCGCG GGCGAGCGCG CCTGCGCGCT CGGGCCGAAC
TACGCGATCG CGCAACTCGC ACGCGCGAAC GCGCTGAAAG AGCTGCAGCG CTGGCCGGAC
GCGCTCGCCG CCGCGGCGCA CGCGCACCGC AGCGCGCCCG ACGATCCCGT CATGCAGTGG
TCGCTCGCGA TGCTGCAACT GCTGCACGGC GACTACGCGA ACGGCTGGGC GAACCATGAG
GCGCGGTGGA ACGGCTCGCG CGAGCTCGGC GACCGCCCGC GCCCCTCGCC GCAGCAGCAG
TGGCGCGGCG AGCCGCTCGC CGGCAAGACA TTGATGCTGT GGGGCGAGCA GGGCTTCGGC
GATGCGCTGC AGTTCGCGCG CTTCGCGCCG ATCATCGCCG AGCAGGCGAC GCGCGCGGGC
GCGCAGGTCG TCTTCGCGTG CTTCGCGGGC CTCGAGCCGC TTTTCGCGCG CAGCTTCGCC
GGCGCGCCGA TGCGGATCGT GCGGCACGAC GCGCCGCAAT TGCCCGCATT CGACCATCAC
CTGCCCGTCG GCAGCGCGCC CCTGTTGCTC GGCGTGCTGC CCGACACGAT CCCGGCCGCG
GGCGGCTACC TGCGCGCGGA TCCGGCGCGC GCCGCGCAAT GGGCGGCGCG GCGGCCGGCC
GACGGCCGGC TGCGCGTCGG GCTCGTCTGG AGCGGCAGCC GCACGCACCA GCGCAACCCG
CTGCGCGCGA TCGATCCGGC GGCGTGCGCG CGCGCATGGC GCGACCTGAC GGGCGTCGCG
TTCCACAGCC TGCAGATCGA CGGCGCCGCC GACGTCGCGA CAATGCGCGC GGCGGGCCTC
GACGTGATCG ACCATACGGC CGAGTTGCCG AGCTTCGACG ACACGGCTGC GTATCTGTCG
AGCCTCGACC TCGTCGTCAC CGTCTGCACG TCGGTCGCGC ACCTCGCGGG CGCGCTCGGC
CGGCCGACGC GGCTGCTGCT CGACGTCAAT CCGCACTGGG TCTGGATGAT CGACCGCGAA
GACAGCCCGT GGTACGGCTC GCTCCGGCTC TACCGGCAGC CCCGGTACCG CGACTGGACG
ACGGTGCTCG ACCGCGTGCG CGACGAACTG GCCGCGCTCG CAGCCGCGCG CGCGTAG
|
|---|
| Protein sequence | MSVHSDRFAA IQMQLKQGDL IAAADAIDAW RAAEPASADA LACRAHWLRL LGRFDEAAAA
LEPALAATPP CATAWAERAR LDRLAGQAER AHAAFDAAHR ADPAATAWLA EWIELLHPLH
RPALALPVAQ ALCEHAPDSA QSWFLLGLTH HYAGDYAAAA AAYRRADALD PAYPMLRNNL
AALRYQTGMT AEALALAEAA IRAEPDNQMA WCNCSNAWLA LREPARALIA GERACALGPN
YAIAQLARAN ALKELQRWPD ALAAAAHAHR SAPDDPVMQW SLAMLQLLHG DYANGWANHE
ARWNGSRELG DRPRPSPQQQ WRGEPLAGKT LMLWGEQGFG DALQFARFAP IIAEQATRAG
AQVVFACFAG LEPLFARSFA GAPMRIVRHD APQLPAFDHH LPVGSAPLLL GVLPDTIPAA
GGYLRADPAR AAQWAARRPA DGRLRVGLVW SGSRTHQRNP LRAIDPAACA RAWRDLTGVA
FHSLQIDGAA DVATMRAAGL DVIDHTAELP SFDDTAAYLS SLDLVVTVCT SVAHLAGALG
RPTRLLLDVN PHWVWMIDRE DSPWYGSLRL YRQPRYRDWT TVLDRVRDEL AALAAARA
|
|---|
| |