| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_A1899 |
|---|
| Symbol | |
|---|
| ID | 4905380 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009078 |
|---|
| Strand | - |
|---|
| Start bp | 1862794 |
|---|
| End bp | 1863606 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640145005 |
|---|
| Product | type III secretion system protein HrpB |
|---|
| Protein accession | YP_001075933 |
|---|
| Protein GI | 126456264 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1317] Flagellar biosynthesis/type III secretory pathway protein |
|---|
| TIGRFAM ID | [TIGR02499] type III secretion apparatus protein, HrpE/YscL family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.890859 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCCGA TCACGCCGAA CAGCTGCGCT CGACTCGGCT TTTCCGGCGA TGTTGTGCCG
CGCGAATGCT TTGGTGAACT GATGACGATC GAGTCCGCCT ATGCGGCGCT CGACGCGGAC
CGCGACGCCG TGCTCGCTGC CGCCCGTCAG GAAGCCGACA GAGTGATGGC GGAGGCAGTG
GCGAGAACGG AAGAGATGAT CGCCGCCGCA CAGAGCGAAT ACGATGCGGC TGCCGAGCGC
GGCTATCGAG ACGGCTACGA CCAAGCGTTC GGCAAGTGGA TGGATCGCCT GGCCGATGTC
GCGGACGCGC AGAACCGACT GCAACTGCGA ATGCGCGAGC GGCTGGCCGA CATCGTCGCA
TCGGCGGTCG AGCAAATCGT GCGCGCCGAA AGCCGCGAGA CGCTATTCAA GCGCGCGTTG
GCATCGGTCG AGCGAATCGT GGACGGCGCG ACATATTTGC GTGTCGTCGT GCACGAGAAC
GATCTGGATC AGGCGAGAGC GATCTTCGGC ACGCTCGAAG CGCGCTGGCG CGAGTTCGGC
CGCCCGATCG CGATGTCGGT GGTGGCGGAC AAGCGGCTTG CTCCAGGCAG TTGCGTATGC
GAGTCCGATT TCGGCGCAAT CGATGCGAGC CTGGATACGC AGCTGCGCGC GATGCGCGGC
GCCGTCGCGC GTGCGCTCAA GCGTTCGATT GAAGAAGCCG GCGCGAACGA GTGCGATGCG
ACACGCCGTG ACGAATCGAT CGGCATCGAG ACGGATCGGG ACGGCGAGCG TGACGCACGG
AACGCCGAGC AGGATGCGGG GGGGCGGGCA TGA
|
|---|
| Protein sequence | MGPITPNSCA RLGFSGDVVP RECFGELMTI ESAYAALDAD RDAVLAAARQ EADRVMAEAV
ARTEEMIAAA QSEYDAAAER GYRDGYDQAF GKWMDRLADV ADAQNRLQLR MRERLADIVA
SAVEQIVRAE SRETLFKRAL ASVERIVDGA TYLRVVVHEN DLDQARAIFG TLEARWREFG
RPIAMSVVAD KRLAPGSCVC ESDFGAIDAS LDTQLRAMRG AVARALKRSI EEAGANECDA
TRRDESIGIE TDRDGERDAR NAEQDAGGRA
|
|---|
| |