| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_A1860 |
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| Symbol | soxA |
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| ID | 4903491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 1106a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009078 |
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| Strand | - |
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| Start bp | 1823960 |
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| End bp | 1826968 |
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| Gene Length | 3009 bp |
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| Protein Length | 1002 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640144966 |
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| Product | sarcosine oxidase, alpha subunit |
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| Protein accession | YP_001075894 |
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| Protein GI | 126455912 |
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| COG category | [E] Amino acid transport and metabolism
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0492] Thioredoxin reductase |
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| TIGRFAM ID | [TIGR01372] sarcosine oxidase, alpha subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.769627 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAGA AAGACCGACT CGGCGCAGGC GGGCGCATCA ACCGCGCACA GCCGCTCACC
TTCACGTTCA ACGGCCGCAC GTATCAGGGC TTCCAGGGCG ACACGCTCGC GTCTGCGCTG
CTCGCCAACG GCGTGCACTT CGTCGCGCGC AGCTTCAAGT ACCACCGTCC GCGCGGGATC
GTGACGGCGG GCGTCGACGA GCCGAACGCC GTCGTGCAGC TCGAAACCGG CGCGTACACG
GTGCCGAACG CGCGCGCGAC CGAGGTCGAG CTGTATCAGG GGCTCGTCGC GACGAGCGTG
AACGCGAAGC CGTCGCTCGA GCACGACCGG ATGGCGGTGA TGCAGAAGCT CGCGCGTTTC
CTGCCGGCGG GCTTCTACTA CAAGACGTTC ATGTGGCCGC GCAATCTGTG GCCGAAGTAC
GAGGAGAAGA TCCGCGAGGC GGCCGGCCTC GGCAAGGCGC CCGACACGCT CGACGCCGAC
CGCTACGACA AGTGCTACGC GCACTGCGAC GTGCTCGTCG TCGGCGGCGG CCCGACGGGG
CTCGCGGCCG CGCATGCGGC GGCCGTCAAC GGTGCGCGCG TGATCCTCGT CGACGATCAG
CGCGAGCTGG GCGGCAGCCT GCTCGCGTGC CGCGCGGAGA TCGACGGCAA GCCGGCGCTG
CAATGGGTCG AGAAGATCGA GGCGGAGCTC GCGAAGCTGC CCGACGTGAG CATCCTCACG
CGCAGCACCG CGTTCGGCTA TCAGGATCAC AACCTCGTGA CCGTCGTGCA GCGGCTCACC
GATCATCTGC CGGTGTCGAT GCGCAAGGGC ACGCGCGAGA TGATCTGGAA GGTGCGCGCC
AAGCGCGTGA TCCTCGCCAC GGGCGCGCAC GAGCGGCCGC TCGTGTTCGG CAATAACGAT
CTGCCGGGCG TGATGACCGC GTCGGCCGTG TCGGCGTACA TCCATCGCTA CGGCGTGCTG
CCGGGCCGCG TCGCGGTCGT CGCGACGAAC AACGATCGCG GCTATCAGTG CGCGCTCGAT
CTGAAGGCAT GCGGCGCGAA GGTGACGGTC GTCGACGCGC GCGCGTCGAC GCGCGGCGCA
TTGCCCGCGG TCGCCAAGCG CCACGGCATC ACGGTGATGA GCGGCGCGGC CGTGTCGGCT
GCGGCGGGCA AGCTGCGCGT CGCGTCGGTC GATGTCGTCT CCTATGCCAA TGGCCGCTCG
GGCGGCAAGA TCGCGACGCT GCCGTGCGAT CTGGTCGCGA TGTCGGGCGG CTTCAGCCCG
GTGCTGCACC TGTTCGCGCA ATCGGGCGGC AAGGCGCACT GGAACGACGA CAAGGCCTGC
TTCGTGCCCG GCAAGCCGGT GCAGGCGGAA GCGAGCGTCG GCGCGGCGGC CGGCGAGTTC
GAGCTCGCGC GCGCGCTGCG GCTCGCGCTC GACGCGGGCG TCGCCGCGGC GAAATCGGCG
GGCTTTGCCG CCGAGCGTCC GCCCGTGCCG AAGCTCGCCG AGGCGGTGGA GGACGCGCTG
CTGCCGTTGT GGCTCGCGAG CGGCGCAGAA GCGGCGGTTC GCGGTCCGAA GCAGTTCGTC
GATTTCCAGA ACGACGTCGG CGCGGCCGAC ATCCTGCTCG CCGCGCGCGA AGGCTTCGAA
TCGGTCGAGC ACGTGAAGCG CTACACGGCG ATGGGCTTCG GCACCGATCA GGGCAAGCTC
GGCAACATCA ACGGGATGGC GATCCTCGCG CAGGCGCTCG GCAAGACGAT TCCGGAGACG
GGCACGACGA CGTTCCGCCC GAACTACACG CCGGTGTCGT TCGGCGCGTT CGCGGGCCGC
GAGCTCGGCG ATTTCCTCGA CCCGATCCGC AAGACCTGCG TTCACGAATG GCATGTCGAG
CACGGCGCGA TGTTCGAGGA CGTCGGCAAC TGGAAGCGGC CGTGGTACTT CCCGCGCAAC
GGCGAGGATC TGCACGCGGC GGTCAAGCGC GAGTGCCTCG CGGTGCGCAA CGGCGTCGGC
ATGCTCGATG CGTCGACGCT CGGCAAGATC GATATCCAGG GCCCGGACGC GGTGAAGCTG
CTGAACTGGG TATACACGAA CCCGTGGAAC AAGCTCGAGG TCGGCAAGTG CCGCTACGGG
CTGATGCTCG ACGAGAACGG CATGGTGTTC GACGACGGCG TGACCGTGCG CCTGGGCGAC
CAGCACTTCA TGATGACGAC CACCACGGGC GGCGCCGCGC GCGTGCTCAC GTGGCTCGAG
CGCTGGCTGC AGACGGAATG GCCGGACATG AAGGTGCGCC TTTCGTCCGT CACCGATCAC
TGGGCGACGT TCGCGGTGGT CGGCCCGAAG AGCCGCCGGG TCGTGCAGAA GGTGTGCAAG
GACATCGACT TCGCGAACGA CGCGTTCCCG TTCATGAGCT ATCGCGACGG CACGGTCGCC
GGCGTGAAGT CGCGCGTGAT GCGCATCAGC TTCTCGGGCG AGCTCGCGTA CGAAGTGAAC
GTGCCGGCGA ACGCGGGCCG CGCGGTATGG GAAGCGCTGA TGGACGCGGG CGCGGAGTTC
GACATCACGC CGTACGGCAC CGAGACGATG CACGTGCTGC GCGCGGAGAA GGGCTACATC
ATCGTCGGTC AGGATACCGA CGGATCGATC ACGCCGTTCG ATCTCGGCAT GGGCGGGCTC
GTCGCGAAAT CGAAGGATTT CCTCGGCCGC CGCTCGCTCA CGCGCGCCGA TACCGCGAAG
AGCGGCCGCA AGCAGTTCGT CGGCCTGCTG ACCGACGACG CGCAGTCTGT TTTGCCCGAA
GGCGGCCAGA TCGTCGAGCT CGATGCGGCC GCGCGTGCGG ACGGCACGAC GCCGATGCTC
GGTCACGTGA CGTCGAGCTA TTACAGTCCG ATCCTGAACC GCTCGATCGC GCTCGCGGTC
GTGAAGGGCG GATTGAGCCG GATGGGCGAG CGCGTCGCGG TCTCGCTCGC GAACGGGCGG
CGTGTCGCCG CGACGATTTC GAGCCCGGTT TTCTACGACA CCGAAGGGGT ACGTCAACAT
GTGGAATGA
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| Protein sequence | MSQKDRLGAG GRINRAQPLT FTFNGRTYQG FQGDTLASAL LANGVHFVAR SFKYHRPRGI
VTAGVDEPNA VVQLETGAYT VPNARATEVE LYQGLVATSV NAKPSLEHDR MAVMQKLARF
LPAGFYYKTF MWPRNLWPKY EEKIREAAGL GKAPDTLDAD RYDKCYAHCD VLVVGGGPTG
LAAAHAAAVN GARVILVDDQ RELGGSLLAC RAEIDGKPAL QWVEKIEAEL AKLPDVSILT
RSTAFGYQDH NLVTVVQRLT DHLPVSMRKG TREMIWKVRA KRVILATGAH ERPLVFGNND
LPGVMTASAV SAYIHRYGVL PGRVAVVATN NDRGYQCALD LKACGAKVTV VDARASTRGA
LPAVAKRHGI TVMSGAAVSA AAGKLRVASV DVVSYANGRS GGKIATLPCD LVAMSGGFSP
VLHLFAQSGG KAHWNDDKAC FVPGKPVQAE ASVGAAAGEF ELARALRLAL DAGVAAAKSA
GFAAERPPVP KLAEAVEDAL LPLWLASGAE AAVRGPKQFV DFQNDVGAAD ILLAAREGFE
SVEHVKRYTA MGFGTDQGKL GNINGMAILA QALGKTIPET GTTTFRPNYT PVSFGAFAGR
ELGDFLDPIR KTCVHEWHVE HGAMFEDVGN WKRPWYFPRN GEDLHAAVKR ECLAVRNGVG
MLDASTLGKI DIQGPDAVKL LNWVYTNPWN KLEVGKCRYG LMLDENGMVF DDGVTVRLGD
QHFMMTTTTG GAARVLTWLE RWLQTEWPDM KVRLSSVTDH WATFAVVGPK SRRVVQKVCK
DIDFANDAFP FMSYRDGTVA GVKSRVMRIS FSGELAYEVN VPANAGRAVW EALMDAGAEF
DITPYGTETM HVLRAEKGYI IVGQDTDGSI TPFDLGMGGL VAKSKDFLGR RSLTRADTAK
SGRKQFVGLL TDDAQSVLPE GGQIVELDAA ARADGTTPML GHVTSSYYSP ILNRSIALAV
VKGGLSRMGE RVAVSLANGR RVAATISSPV FYDTEGVRQH VE
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