| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_A1837 |
|---|
| Symbol | betA |
|---|
| ID | 4903949 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009078 |
|---|
| Strand | + |
|---|
| Start bp | 1805115 |
|---|
| End bp | 1806812 |
|---|
| Gene Length | 1698 bp |
|---|
| Protein Length | 565 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640144943 |
|---|
| Product | choline dehydrogenase |
|---|
| Protein accession | YP_001075871 |
|---|
| Protein GI | 126457859 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGACAC GCGAATTCGA CTACATCATC TGCGGCGCCG GCTCCGCGGG CAACGTGCTC
GCGACGCGCC TCACCGAGGA TCCGGGCGTC ACCGTGCTGC TCCTCGAGGC GGGCGGCCCC
GACTACCGTT TCGACTTCCG CACGCAGATG CCGGCGGCGC TCGCCTACCC GCTGCAAGGC
CGCCGCTACA ACTGGGCGTA CGAAACCGAT CCCGAGCCGC ACATGAACCA CCGCCGGATG
GAATGCGGGC GCGGCAAGGG GCTCGGCGGC TCGTCGCTGA TCAATGGGAT GTGCTACATC
CGCGGCAATG CGCTCGATTA CGACAACTGG GCGACGCACA AGGGGCTCGA GGACTGGGCG
TATCTCGATT GCCTGCCGTA CTTCAGGAAG GCCGAGACGC GCGATGTCGG CCCGAACGAC
TATCACGGCG GTGACGGCCC GGTCTCCGTG ACGACGAGCA AGCCCGGCGT GAATCCGCTG
TTCGAGGCGA TGGTCGAGGC CGGCGTGCAG GCCGGCTATC CGCGCACCGA CGATCTCAAC
GGCTATCAGC AGGAAGGCTT CGGCCCGATG GACCGCACGG TCACGCCGCG CGGCCGCCGC
GCCTCGACCG CGCGCGGCTA TCTCGACCAG GCGCGCGCGC GGCCGAATCT CGAAATCGTC
ACGCACGCGC TTGCCGATCG CATCCTGTTC TCCGGCAAGC GCGCAACGGG CGTCACGTTC
CTGCACGGCA GCGCGCGCGT CACCGCGCAC GCGCGCCGCG AAGTGCTCGT GTGCAGCGGC
GCGATCGCAT CGCCGCAACT GCTGCAGCGC TCGGGCGTCG GCCCCGGCGA ATGGCTGCGC
GAGCTCGACA TTCCGGTCGT GCTCGACCTG CCCGGCGTCG GCCGCAATCT GCAGGATCAC
CTGGAGATGT ACATCCAGTT CGAATGCAAG GAGCCGGTAT CGCTATATCC GGCGCTCAAG
TGGTGGAACC AGCCGAAGAT CGGCCTCGAA TGGATGCTCA ACGGCACCGG GCTCGGCGCG
AGCAACCACT TCGAGGCGGG CGGCTTCATT CGCACCCGCG ACGACGATCC GTGGCCGAAC
ATCCAATATC ACTTCCTGCC CGTCGCGATC AATTACAACG GCTCGAACGC GATCGAGATG
CACGGCTTCC AGGCGCACGT CGGCTCGATG CGCTCGCCGA GCCGCGGGCG CGTGAAGCTG
AAGTCGCGCG ACCCGCACGC GCATCCGAGC ATCCTGTTCA ATTACATGGC CGAGGCGCTC
GACTGGCGCG AGTTCCGCGA CGCGATCCGC GCGACGCGCG AGATCATGCG GCAGCCCGCG
CTCGACCGCT TCCGCGGCCG CGAGCTGAAC CCGGGCGCGG ATCTGAAAAG CGACAACGAG
CTCGATACGT TCGTACGCGC GCGCGCGGAA ACGGCATTCC ATCCGTCATG CTCGTGCAAG
ATGGGCTACG ACGACATGGC GGTGGTCGAC AACGAAGGCC GCGTGCACGG GATCGACGGA
TTGCGGGTCG TCGACGCGTC GATCATGCCG ATCATCACGA CCGGCAATCT GAACGCACCG
ACGATCATGA TCGCCGAGAA GATCGCCGAC CGGATCCGCC AGCACAAGCC GCTCGAACGC
TCGAACGCGC AATACTACGT CGCGAACGGC GCGCCCGCGC GCGGCGGCAA GCCCGCGCGG
GCGCCCGCCG TCGTATAG
|
|---|
| Protein sequence | MTTREFDYII CGAGSAGNVL ATRLTEDPGV TVLLLEAGGP DYRFDFRTQM PAALAYPLQG
RRYNWAYETD PEPHMNHRRM ECGRGKGLGG SSLINGMCYI RGNALDYDNW ATHKGLEDWA
YLDCLPYFRK AETRDVGPND YHGGDGPVSV TTSKPGVNPL FEAMVEAGVQ AGYPRTDDLN
GYQQEGFGPM DRTVTPRGRR ASTARGYLDQ ARARPNLEIV THALADRILF SGKRATGVTF
LHGSARVTAH ARREVLVCSG AIASPQLLQR SGVGPGEWLR ELDIPVVLDL PGVGRNLQDH
LEMYIQFECK EPVSLYPALK WWNQPKIGLE WMLNGTGLGA SNHFEAGGFI RTRDDDPWPN
IQYHFLPVAI NYNGSNAIEM HGFQAHVGSM RSPSRGRVKL KSRDPHAHPS ILFNYMAEAL
DWREFRDAIR ATREIMRQPA LDRFRGRELN PGADLKSDNE LDTFVRARAE TAFHPSCSCK
MGYDDMAVVD NEGRVHGIDG LRVVDASIMP IITTGNLNAP TIMIAEKIAD RIRQHKPLER
SNAQYYVANG APARGGKPAR APAVV
|
|---|
| |