Gene BURPS1106A_A1774 details

Gene Information

• Locus tag: BURPS1106A_A1774
• ID: 4904136
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1106a
• Kingdom: Bacteria
• Replicon accession: NC_009078
• Strand: +
• Start bp: 1746715
• End bp: 1748745
• Gene Length: 2031 bp
• Protein Length: 676 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 640144880
• Product: BCCT family transporter
• Protein accession: YP_001075808
• Protein GI: 126457740
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1292] Choline-glycine betaine transporter
• TIGRFAM ID: [TIGR00842] choline/carnitine/betaine transport

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.0841224
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCCCAT CCCGCTCCAC GCCGCGCACG ACGCTCAAGC CGCCAGTCGT CGTGCCGTCG 
CTCGCCGTGA TCGGCGCGCT CCTCGCCGTC TGCGCGCTGC GGCCGAACGA GGCCGGCGCC 
CTCTTCGGCG CGGCCCAGCA ATGGATCGTC GAGCGATTCG ACTGGTTCTA CGTGCTCGCG 
ATCACGACCT TCCTGATCTT CCTCGTGCTG ATCGCCGCGA GCCGCTTCGG CAACATCAAG 
CTCGGCCCCG ACGACGCGGA GCCGGAATTC AGCTTCGTGT CGTGGACCGC GATGCTGTTC 
GCGGCCGGCA TGGGCATCGG CCTCATGTAC TTCGGCGTCG GCGAGCCGAT CCAGCATTAC 
CTGTCGCCGC CGACGGCCGC GGGCGGCACG CCCGCCGCCG CGCGCGAGGC GATGCTGATG 
TCGTTCTTCC ATTGGGGCCT GCACGCATGG GCGACCTACG GCGTGATGGG TCTCGTGCTC 
GCGTACTTCG GCTTTCGCTA CAACCTGCCG CTCACGCTGC GCTCGGGCCT CTATCCGGTG 
CTGCGCGAAG GCGTGAACGG CTGGATCGGG CACACGGTCG ACGCGTTCGC GCTCGTCGGC 
ACGGTGGCCG GGATCGCGGT GACGCTCGGC TACGGCGTGC TGCAACTGAG CGCGGGCCTG 
CACACGATCG CCGGCTGGCA AACCGATACC GATACGTTCC GCATCGGCCT CGTCACGGTG 
GTCGTCGCGC TCGCCGGACT CTCCGCCGCG AGCGGGCTCG ACAAGGGCGT GCGCCGGCTG 
TCCGAGCTCA ATCTGATGCT CGCGTTCGCG TTGCTCGCGT TCGTCGTCGT CGCGGGGCCG 
ACGTCGTTCC TGCTGCGCGC GATCGGCGAC AACATCGGCG AATATCTGTC GAAGCTCGTG 
TCGCTATCGT TTCGCACGTA CGCATACGAA GCGCCGAACG ACAAAGGCTG GTTCGGCGGC 
TGGACGCTGC TCTACTGGGC GTGGTGGGTG TCGTGGTCGC CGTTCGTCGG GATGTTCATC 
GCCCGGATCT CGCGCGGCCG CACGATCCGC CAGTTCGTGA TCGGCGTGCT GCTCGTGCCC 
ACCGCGTTCA ATCTCGTCTG GATGACCGCG TTCGGCAACA GCGCGATCTG GCTCGACACG 
CACGCGGCCG CGGGCGCGCT CGCGCAAACG GCGACCAACG TCGACGCGCT GCTGTTTCGC 
TTCTTCGATT ACCTGCCGCT CACGCAACTG CTGTCGGTCG CGGCGATCGT GCTGATCGCG 
GTGTTCTTCG TCACGTCGGC CGATTCGGGC GCGTTCGTGA TCGACGCGAT CGCCACGCGC 
GGCGCGCCGC AATCGCCCGT GTGGCAGCGG CTCTTCTGGG CGGCCGTGCT CGGCGTGACG 
GCGTCGGTGC TGCTCGTCGC GGGCGGGCTG AAGGCGCTGC AGGCGCTCAC GCTCGTCGCC 
GCGCTGCCCG TCGCGCTCGT GATGCTCGCG CTCTGCTACG GGCTCTGGCG CGGCCTGAAA 
GCCGACCACG CGCACTACTC GCAGGACATG GCGCCCGCCA CCAGCTTCTG GACCGGCCAG 
CACTGGCGCC ACCGCCTGTC GCAGATCCTG CGGCACACGA GCGACGCCGA CGCGCGGCAG 
TTCATCGCGC AGACGGTCGA GCCCGCGCTG CGCAAGGTCG CCGACGAGCT GAAGGCGGGC 
GGCGTCGACG CGCACGTCGC GCGCGACGAC GACGACGCGG TGCGCCTCAC GGTGCCCGCG 
CCCGCGCAGC GCGATTTCGT CTATGGCGCG CGGGTGTCGC GCAAGTCCGC GCCCGCGTTC 
CGCATCCGCG AGGCGGCCGA GCCCGAGCCG CAGCGCGAGC ACGTGTGCGA GGTGCTGACG 
TTCTTCGCGG ACGGGCGGCT CGGCTACGAC ATCGAGTACC TGCGCGGCGA CGAGATCATC 
GCCGACGTGC TGCGGCAGTA CGAGCGCTAC GTGTCGCTCG CGGCGGACAC GCGCACGCAC 
CTGCTGAACC GCGCGCCCGA GCACGCGGGG CCGGACGGTC TGTCGCGGTA G 

 

Protein sequence

MPPSRSTPRT TLKPPVVVPS LAVIGALLAV CALRPNEAGA LFGAAQQWIV ERFDWFYVLA 
ITTFLIFLVL IAASRFGNIK LGPDDAEPEF SFVSWTAMLF AAGMGIGLMY FGVGEPIQHY 
LSPPTAAGGT PAAAREAMLM SFFHWGLHAW ATYGVMGLVL AYFGFRYNLP LTLRSGLYPV 
LREGVNGWIG HTVDAFALVG TVAGIAVTLG YGVLQLSAGL HTIAGWQTDT DTFRIGLVTV 
VVALAGLSAA SGLDKGVRRL SELNLMLAFA LLAFVVVAGP TSFLLRAIGD NIGEYLSKLV 
SLSFRTYAYE APNDKGWFGG WTLLYWAWWV SWSPFVGMFI ARISRGRTIR QFVIGVLLVP 
TAFNLVWMTA FGNSAIWLDT HAAAGALAQT ATNVDALLFR FFDYLPLTQL LSVAAIVLIA 
VFFVTSADSG AFVIDAIATR GAPQSPVWQR LFWAAVLGVT ASVLLVAGGL KALQALTLVA 
ALPVALVMLA LCYGLWRGLK ADHAHYSQDM APATSFWTGQ HWRHRLSQIL RHTSDADARQ 
FIAQTVEPAL RKVADELKAG GVDAHVARDD DDAVRLTVPA PAQRDFVYGA RVSRKSAPAF 
RIREAAEPEP QREHVCEVLT FFADGRLGYD IEYLRGDEII ADVLRQYERY VSLAADTRTH 
LLNRAPEHAG PDGLSR