Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_A1760 |
Symbol | pcaH |
ID | 4904086 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009078 |
Strand | + |
Start bp | 1734616 |
End bp | 1735350 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640144866 |
Product | protocatechuate 3,4-dioxygenase, beta subunit |
Protein accession | YP_001075794 |
Protein GI | 126457006 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
TIGRFAM ID | [TIGR02422] protocatechuate 3,4-dioxygenase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00117633 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGACAATCA TCAATCTGGA GACGTTTCCG ATGGATTCCT CGACGCTCGC GCCGCGCGAC TGGCCGTCGC ATCCCGCGTA CATTCATCCG CCGTACCGCT CTTCCGTGAA GCGCGGCCCG ACGCAGCCGC TGATTCCGCT GAAGGAGACG CTGCGTAACC AGCACGCGCC CGTCTACGGC GCGGACGATC TCGGCGCGCT CGACCACGAT CTGACGAAGA ACGCGGCGAA GAACGGCGAG CCGCTCGGCG AGCGGATCGT CGTCACGGGC CGTGTGCTCG ACGAGGGCGG CAAGCCGGTG CGCGACACGC TCGTCGAGGT CTGGCAGGCG AACGCCGCGG GCCGCTACGT GCACAAGGTC GACCAGCACG ACGCGCCGCT CGACCCGAAC TTCCTCGGCG CGGGCCGGTG CCTGACCGAC GCGAACGGCC GCTATCGGTT CCTCACGATC AAGCCGGGCG CGTATCCGTG GGGCAACCAT CCGAACGCCT GGCGGCCGAA CCATATCCAT TTCTCGTTGT TCGGCGACTA CTTCGGCTCG CGGCTCGTCA CGCAGATGTA TTTCCCGGGC GATCCGCTCC TCGCGCTCGA CCCGATCTTC CAGGGCACGC CCGAGGACGC GCGCGAGCGG CTGATCTCGC GCTTCTCGAT CGACACGACC GAAGAAGGCT TCGCGCTCGG CTACGAATTC GACATCGTGC TGCGCGGCCG CGACGCCACC CCGATGGAGC GCTGA
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Protein sequence | MTIINLETFP MDSSTLAPRD WPSHPAYIHP PYRSSVKRGP TQPLIPLKET LRNQHAPVYG ADDLGALDHD LTKNAAKNGE PLGERIVVTG RVLDEGGKPV RDTLVEVWQA NAAGRYVHKV DQHDAPLDPN FLGAGRCLTD ANGRYRFLTI KPGAYPWGNH PNAWRPNHIH FSLFGDYFGS RLVTQMYFPG DPLLALDPIF QGTPEDARER LISRFSIDTT EEGFALGYEF DIVLRGRDAT PMER
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