| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_A0817 |
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| Symbol | ppd |
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| ID | 4904815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 1106a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009078 |
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| Strand | - |
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| Start bp | 812415 |
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| End bp | 813641 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640143923 |
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| Product | phosphonopyruvate decarboxylase |
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| Protein accession | YP_001074853 |
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| Protein GI | 126456814 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]
[COG4032] Predicted thiamine-pyrophosphate-binding protein |
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| TIGRFAM ID | [TIGR03297] phosphonopyruvate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.438085 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACGG AAGACCTGAT CGGCATACTG ACCGATGCCG GCGTCGATCT CGCGGTCGGC
GTTCCAGATT CCTTACTGAA ATCGTTCTGC GGCCGGCTGA ACGATCCGGA TTGCCCGCTG
CGCCACCTCG TCGCGAGCAG CGAGGGCGGC GCGGTCGGCA TCGCGATCGG CCACCATCTC
GCAACGGGCG GCCTCGCGGC CGTCTACATG CAGAACTCCG GCATCGGCAA CGCGATCAAC
CCGCTCGTGT CGCTTGCCGA TCGCGCGGTC TATGGGATTC CGCTCGTGCT GATCGTCGGC
TGGCGCGCGG AAATCTCGGC AAGCGGCGCA CAGGTACACG ACGAGCCGCA GCACGTGACG
CAAGGCCGCA TCACGCTGCC GCTGCTCGAC GCGCTGTCGA TCCGCCACCT CGTGCTCGAG
CGCGCCGGCG GCGAAAACGA CGCGCTCGCG CCGTCGATCG CGCAATTGAT CGCCAGCGCG
CGCCAAACGT CGCAGCCCGT CGCGCTCGTC GTGCGCAAGG ACGCGTTCGA CGACGCGAGC
GCCTCGCGGC CGGGCGCGGC CGCCCCGCAC GCCGGCCGGA TGACCCGCGA GCAGGCCATC
GCGCTGATCG TCGAGCACGC GGACGCAGGC ACGGCGATCG TCTCGACGAC GGGCGTCGCC
TCGCGCGAGC TGTACGAGCT GCGCGATCGG CTCGGCCACT CGCACGCGCG CGATTTCCTG
ACGGTCGGCG GCATGGGGCA CGCGTCGCAG ATCGCGGTCG GCATCGCGCT CGCCCGCCCC
GCGCAAAAGG TGATCTGCAT CGACGGCGAC GGCGCGCTGC TGATGCACAT GGGCGGCCTC
GCGTACTGCG CGGGCGCGCC GAACCTCACG CACGTCGTCA TCAACAACGG CGTCCACGAT
TCGGTCGGCG GGCAACCCAC GCTTGCCGCG CACTTGCGGC TGTCGCACAT CGCGGCGTCG
TGCGGCTACG CGTTCAGCCG CAGCGTCGCG ACGCCCATCG AGCTCGAGAG CGCGCTGCAT
CACGCGAGCC GCCTCGACGG CAGCGCATTC ATCGAAGTGA CGTGCCGCCC CGGCTATCGC
AGCGATCTCG GCCGGCCGCG CACGTCGCCC GCCGAGAACA AACGCCATTT CATGGCCTTC
CTATCCCGCA ACGGAGCGAC ACATGAGCGA GACGATCACG CGCAGGAAAG TGGCATACAA
GACGCTGTCC AATGCGCTCG GCACTGA
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| Protein sequence | MKTEDLIGIL TDAGVDLAVG VPDSLLKSFC GRLNDPDCPL RHLVASSEGG AVGIAIGHHL
ATGGLAAVYM QNSGIGNAIN PLVSLADRAV YGIPLVLIVG WRAEISASGA QVHDEPQHVT
QGRITLPLLD ALSIRHLVLE RAGGENDALA PSIAQLIASA RQTSQPVALV VRKDAFDDAS
ASRPGAAAPH AGRMTREQAI ALIVEHADAG TAIVSTTGVA SRELYELRDR LGHSHARDFL
TVGGMGHASQ IAVGIALARP AQKVICIDGD GALLMHMGGL AYCAGAPNLT HVVINNGVHD
SVGGQPTLAA HLRLSHIAAS CGYAFSRSVA TPIELESALH HASRLDGSAF IEVTCRPGYR
SDLGRPRTSP AENKRHFMAF LSRNGATHER DDHAQESGIQ DAVQCARH
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