Gene BURPS1106A_A0239 details

Gene Information

• Locus tag: BURPS1106A_A0239
• Symbol: sciN
• ID: 4904598
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1106a
• Kingdom: Bacteria
• Replicon accession: NC_009078
• Strand: -
• Start bp: 227995
• End bp: 228498
• Gene Length: 504 bp
• Protein Length: 167 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 640143346
• Product: SciN protein
• Protein accession: YP_001074282
• Protein GI: 126456114
• COG category: [S] Function unknown
• COG ID: [COG3521] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03352] type VI secretion lipoprotein, VC_A0113 family

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCATCCGA CCACCCCCGT TGCCGCCGTC GCGCTCGCGC TCGCGTGCGC CGCGTGCGCG 
AGCGGCGCGG CCAAGCAGAA GGAGCCGCTG CGGCTCGAGC TCGCCGTGCG CGCCGCGCCC 
ACGGTCAATC CGGACGATCG GAGCCGGCCG GCTCCGATCG TCGTGAGCGT CTACGAGCTG 
AAGACCGACG GCGCATTCAA CGCCGCCGAT TTCTTCACGC TGCAGGGCCC GGACAAGACC 
GTGCTCGCCG ACGATCTGCT CGCGCGCGAG CGTTTTCAAC TGCGCCCCGG CGAGCGCCGC 
GTGATCCGGC GCGACGCCGA TCCGGCGGCG GGCGCGCTCG GCGTCGTCGC CGCGTACCGC 
GATCTGCCGA ACTCGGTGTG GCGCGCGGCA TATCCGCTGC CGCCCGCGCG GGACGCCGCA 
TGGTATCGCT TCTCGTCGCC GAAGCTGAAG CTGACCATCG AGCTCGACAC GCACGCGATC 
AGGATCACCG AACCCGGAAA ATGA 

 

Protein sequence

MHPTTPVAAV ALALACAACA SGAAKQKEPL RLELAVRAAP TVNPDDRSRP APIVVSVYEL 
KTDGAFNAAD FFTLQGPDKT VLADDLLARE RFQLRPGERR VIRRDADPAA GALGVVAAYR 
DLPNSVWRAA YPLPPARDAA WYRFSSPKLK LTIELDTHAI RITEPGK