Gene BURPS1106A_A0137 details

Gene Information

• Locus tag: BURPS1106A_A0137
• Symbol: sciN
• ID: 4905666
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1106a
• Kingdom: Bacteria
• Replicon accession: NC_009078
• Strand: +
• Start bp: 120593
• End bp: 121135
• Gene Length: 543 bp
• Protein Length: 180 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 640143244
• Product: SciN protein
• Protein accession: YP_001074180
• Protein GI: 126456559
• COG category: [S] Function unknown
• COG ID: [COG3521] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03352] type VI secretion lipoprotein, VC_A0113 family

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTTTCC CATTTTTCTT TCGCCGCGAA GCGGCCAGGC GAACCGCCGT CAAGCGCGTT 
GTGGCGGCAA TGGTATGCGC ATCGCTCGCG GCTTGCGCAA GCTTGCCGGC ACGCAAGGAA 
ACAGCCGATC TGATCGTGAA GATCAAGGTG AGCGAAGGCG CCAATCCGGA TGAGCATCAG 
CGCCCGGCGC CCGTGATGGT GCGGCTGTAC GAGCTGAAAT CGGCCGGCGC GTTCGAGAAC 
GCCGATTTTT TCACGCTACA GAGCGACAGC CGCAAGGTGT TGGGTGACGA CGCGATCGCG 
ACGGATGAAT TCGTGATGCG CCCGGGCGAC ACCCGGGATA TTCATCGGCG TGCCGATTCC 
GCGGGGACGT CGGTCGGCGT GCTGGTCGGT TATCGAGAGC TCGGCAAATC GGTGTGGCGG 
GCGGTCCATA AGCTGCGGCC GGCTCCGGAA GATGCATGGT ACCGGGCATT CACGCCAAGG 
ACGAAAATCA AGTTGAACGT CGATGTCGGG CAGCAGACGG TGACGATTAC AGAATTGGAA 
TGA 

 

Protein sequence

MAFPFFFRRE AARRTAVKRV VAAMVCASLA ACASLPARKE TADLIVKIKV SEGANPDEHQ 
RPAPVMVRLY ELKSAGAFEN ADFFTLQSDS RKVLGDDAIA TDEFVMRPGD TRDIHRRADS 
AGTSVGVLVG YRELGKSVWR AVHKLRPAPE DAWYRAFTPR TKIKLNVDVG QQTVTITELE