Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_A0136 |
Symbol | sciM |
ID | 4905685 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009078 |
Strand | + |
Start bp | 119983 |
End bp | 120465 |
Gene Length | 483 bp |
Protein Length | 160 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640143243 |
Product | SciM protein |
Protein accession | YP_001074179 |
Protein GI | 126456784 |
COG category | [S] Function unknown |
COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGCACG ACATTTTCCT CAAGATCAAC GGTATCGATG GCGAGGCGGA AGACGCAACC CACAAGAGCG AAATCGAGGT CTTGAGCTGG TCGTGGAACG TCAGTCAGCA ATCGAACATG CACCTGGGTT CGGGGGGCGG CGCGGGCAAG GCGACGATCG ATGATCTGCA GTTCGAACAT TACATCGATC GCGCGAGCCC GAATCTCGTT CAATACTGCT TGCTCGGCAA GCATATCGAC GAAGCCCGGC TCGTGGTGCG TAAGGCGGGC GGCAGCCCGC TCGAATACAT CAAGCTCACG ATGAGCGATG TGCTCGTTAC GCAGGTGAGC CCGGCAGGCG TGGCTCAGGA CGAATCGCGC CCGCGTGAGC TCGTTCGGCT GTCGTTCTCG CGCCTGAAGC AAGAGTATGT CGTCCAGAAC CCGCAGGGCG GCAGCGGCGG CGCAATCACC GCGACTTTCG ACATCAAGAA GAACGCGGCG TAA
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Protein sequence | MSHDIFLKIN GIDGEAEDAT HKSEIEVLSW SWNVSQQSNM HLGSGGGAGK ATIDDLQFEH YIDRASPNLV QYCLLGKHID EARLVVRKAG GSPLEYIKLT MSDVLVTQVS PAGVAQDESR PRELVRLSFS RLKQEYVVQN PQGGSGGAIT ATFDIKKNAA
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