Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_A0056 |
Symbol | pcaB |
ID | 4904948 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009078 |
Strand | + |
Start bp | 44253 |
End bp | 45611 |
Gene Length | 1359 bp |
Protein Length | 452 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640143163 |
Product | 3-carboxy-cis,cis-muconate cycloisomerase |
Protein accession | YP_001074099 |
Protein GI | 126456258 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0015] Adenylosuccinate lyase |
TIGRFAM ID | [TIGR02426] 3-carboxy-cis,cis-muconate cycloisomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0457569 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCGAAG ACAGTGCCCG TCTGACCGCT CTCGTTTGCG GAAGCGAACC GCTCAACCGG ATCTGGTCGC CGCATGCGAC GTTGCAGCGG ATGCTCGACG TCGAAGCGGC GCTCGCGCGC GCGCTCGCCG CGAATGGCGT GATTCCGGCG AACGCGGTGC GGCCGATCGA GGCGGCCTGC GCGGCGAGCG AGCTCGACGC GCAGGCGCTG ATGCGCGAGG CGGCGCTCGG CGGCAATCTC GCGATTCCGC TCGTCAGGCA ATTGACCGCA CGCGTGAAGG TGCGCGACGC CGAAGCGGCG AAGTACGTGC ACTGGGGCGC GACGAGCCAG GACATCATCG ATACCGCCGC CGTGCTGCAA CTGCGCGACA CGCTCGACTG GCTCGATCCG CTGCTGCGCG ACACGTGCAC GGCGCTCGCG ACGCTCGCGG CCGCGCACCG CACGACACCG ATGATCGGTC GCACGTGGCT GCAGCAGGCG CTGCCGATCA CGCTCGGATT GAAGTTCGCG CAATGGCTCG ACGCGCTGCT GCGCCACCGC GAGCGTATCG TCGCGTTGCG CGAGCGCGCG CTCGCATTGC AGTTCGGCGG CGCGGCGGGC ACGCTCGCGA GCTTGCGCGA CGCGGCGCCC GCGGTTGCGC GCTCGCTCGC CGACGACCTT CGGCTCGCGC TGCCGGCCGT GCCGTGGCAC ACGCAGCGCG ACCGGATCGC CGAGACGGCG GCTTGCTTCG GGATGCTGAT CGGCACGCTC GGCAAGATCG CGCGCGACAT TTCGCTGTCG ATGCAAACGG AGATCGGCGA GCTCGCGGAG CCCGCCGCGG CGGGCAAGGG CGGCTCGTCG ACGATGCCGC ACAAGCGCAA TCCGGTCGGC TGCGCGGCCG TGCTGACCGC GGCCGTGCGC GCGCCCGGGC TCGTGTCGAC CGTGCTCGCC GGCATGGTCC AGGAACACGA GCGCGCGCTC GGCGGCTGGC AGGCCGAGTG GGACGCGCTG CCCGAACTCG CGCGGCTCGC GGGCGGCGCG CTCGCGCAGG TCGCGCAGAT CGTCGAGGGA TTGAACGTCG ACGTCGCGCG CCTTGCCGAC AATCTCGACG CGACGCGCGG CCTCGTGCTC GGCGAGGCGG TGATGCTCGC GCTCGGCGAC AGGATCGGCC GGCTCGACGC GCATCATCTC GTCGAGCGCG CCTCGAAGCA AGCCGTGCGC AGCGGCCGCC CGCTGTACGA CGTGCTGGCC GCGGATCCCG ACGTCGCCGC GCACCTCACG CCGCAGGCGT TGCGGCAGTT GCTCGATCCC GCTCATTACG TCGGCGAGGC GCACGCCTAT GTCGACGCCG TGCTCGCGCT CCACGCGAGC CGCCATTAA
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Protein sequence | MLEDSARLTA LVCGSEPLNR IWSPHATLQR MLDVEAALAR ALAANGVIPA NAVRPIEAAC AASELDAQAL MREAALGGNL AIPLVRQLTA RVKVRDAEAA KYVHWGATSQ DIIDTAAVLQ LRDTLDWLDP LLRDTCTALA TLAAAHRTTP MIGRTWLQQA LPITLGLKFA QWLDALLRHR ERIVALRERA LALQFGGAAG TLASLRDAAP AVARSLADDL RLALPAVPWH TQRDRIAETA ACFGMLIGTL GKIARDISLS MQTEIGELAE PAAAGKGGSS TMPHKRNPVG CAAVLTAAVR APGLVSTVLA GMVQEHERAL GGWQAEWDAL PELARLAGGA LAQVAQIVEG LNVDVARLAD NLDATRGLVL GEAVMLALGD RIGRLDAHHL VERASKQAVR SGRPLYDVLA ADPDVAAHLT PQALRQLLDP AHYVGEAHAY VDAVLALHAS RH
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