Gene Mjls_5025 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMjls_5025 
Symbol 
ID4880723 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMycobacterium sp. JLS 
KingdomBacteria 
Replicon accessionNC_009077 
Strand
Start bp5263487 
End bp5265133 
Gene Length1647 bp 
Protein Length548 aa 
Translation table11 
GC content70% 
IMG OID640142335 
Productpolysaccharide deacetylase 
Protein accessionYP_001073280 
Protein GI126437589 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.794076 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCGCGA CGTCGACGCC CCGCACCCCA TGGCGGACCC GGATCGTGCG GGCTTCGGTT 
CGCGCCGCGT TCGCGCTCGT CGCCGCGGCG CTGCTGGCGG CGCCCTTCGG GCTGGCGTGG
TATCTGCACG TGCGCGGACT GCAGGTGAGC GAGCAGTTCT ACACGCCCGC TTCGTCACTC
GCGGCCGACC AGGACGCGCT CGCAGAGACC CTGCGATCCG AACTGCCTGA CCGCGCGGCC
CCGGTCGTCC TCGCCTACCA CGACATCCGG CCGATGACGG CGACGGAGGA CCAGCCCGAC
CCCGCCGCGG ATCCGCGACA CCATCTCGTC GTCACGCCGG AGGCGTTCGA TGCGCAGCTC
ACCGCGCTGC GGGCCGCGGG CTACACCTCC ATCACGTCCG ATCAGTACGT GGACTACCTG
GCAGGTGGCG AGGTCCCGGA ACGGTCGGTG CTCCTCACGT TCGACGACGG CACGCACGGA
CTGTGGACAT ACGCGGACAA GATCCTCGAG CGACACGGGA TGCACGCGGT GTCGTTCCTC
ATCACCGGCA ATGTCGGCGC GAAACGGCCG TATTACCTGT CGTGGCAGGA GATCGAGCGG
ATGGCCGACT CCGGCCGGTG GGACTTCCAG TCGCACACCC GGAAGATGCA CGCCCGGCTG
CCGATCGATG CCGCGGGCAC CCTGGCATCC GAGATGACGC ACCGCCGTTG GCTTTTCGAG
AAGAACCGGT CAGAGACGCT CGACGAGTTC GAAGGCAAGA TCAGAACCGA CCTGCTGGCG
TCGGTACAGG ACATCGTCGA CCACGGACTG CCGCGTCCGA CACTGTTCGC CTTCCCGTTC
TCCGACGGAT ACGACGAAGA CCGCGCCTCG AGCGACCCAC AGGCTGCCGC GACCGCGCTG
ACGGTCGTCC GGGAGATCTT CGCGGGCGCG TTCAACAACG CACCCCCGCA GCCACTGCCC
GCCGGTGCCC GGGCCGCGGC GGTGGGAATG ACGGGCCGCA TCGAGCTGAC CGTCGACTCC
ACCGTCGAGG GGTTGCTCGA GAGCGTCCGC GCGAAAACGC CTGTCGCCCC GGGCCATGCT
GCACCGTCAC GCCGCCCCGA TCTGTGGACA CGGCTGAGCG ACGACACCAA GGCCCCATTG
CGCATAGAGG GGAGGGACGT TCGCTTCGAC GGGCCGGGCC GGTGGTCGGG TGCCGCGTAC
GGACGTGAGG CGACGGCGGA CTGGGCGTCG TACACGGCGA CGGTCACTGT GGGCGGGTTG
GCGGCACGTG GTGTGGAGAA CGGGGCGCTG ATCGCCAGGG TCGGCACCGG CGAAGAGGTG
TCGGTCCAGG TCAGCGCGGA GTACGCCCGG GTGTCGATCG GGCTCGGTCC GGCGTGGAAG
GTGTTGCGTG ACCTGCCGTT GCCGCCCGGT GACCGGCACA CCGTCACCAT GGAGGTGTCG
CCGACGGCCA TCGGCGTGGT CGTGGACGGC TCGGCCCGGA TGTCGGTCCC GGCCGGCGGT
GGGCCCGCCG AGTACGGCGG TATCGGGCTG AGCAGTTCGC GGACCACGGA GGCCGCACCG
TGGCCGGTCT TCACCGACCT CTCGGTCACC CCGGGCCGGG ACGTTCCGAA TGTCAAAGCG
GGGGTAGGGG TTCCGACCCG AAGCTGA
 
Protein sequence
MTATSTPRTP WRTRIVRASV RAAFALVAAA LLAAPFGLAW YLHVRGLQVS EQFYTPASSL 
AADQDALAET LRSELPDRAA PVVLAYHDIR PMTATEDQPD PAADPRHHLV VTPEAFDAQL
TALRAAGYTS ITSDQYVDYL AGGEVPERSV LLTFDDGTHG LWTYADKILE RHGMHAVSFL
ITGNVGAKRP YYLSWQEIER MADSGRWDFQ SHTRKMHARL PIDAAGTLAS EMTHRRWLFE
KNRSETLDEF EGKIRTDLLA SVQDIVDHGL PRPTLFAFPF SDGYDEDRAS SDPQAAATAL
TVVREIFAGA FNNAPPQPLP AGARAAAVGM TGRIELTVDS TVEGLLESVR AKTPVAPGHA
APSRRPDLWT RLSDDTKAPL RIEGRDVRFD GPGRWSGAAY GREATADWAS YTATVTVGGL
AARGVENGAL IARVGTGEEV SVQVSAEYAR VSIGLGPAWK VLRDLPLPPG DRHTVTMEVS
PTAIGVVVDG SARMSVPAGG GPAEYGGIGL SSSRTTEAAP WPVFTDLSVT PGRDVPNVKA
GVGVPTRS