| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mjls_3879 |
|---|
| Symbol | |
|---|
| ID | 4879589 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium sp. JLS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009077 |
|---|
| Strand | - |
|---|
| Start bp | 4105191 |
|---|
| End bp | 4107182 |
|---|
| Gene Length | 1992 bp |
|---|
| Protein Length | 663 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640141191 |
|---|
| Product | transcription termination factor Rho |
|---|
| Protein accession | YP_001072146 |
|---|
| Protein GI | 126436455 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1158] Transcription termination factor |
|---|
| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.495548 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGATA CGGACCTCTT CACGGCCGAC AGCGCTGAGC GAACAGAGTT GCCGAACGTC
GTGAACACCG AAACTTCCAC GGCGTCGGAG GGCCCGGCCG TCACCACGAC GACCGCGGAG
TCCGCCCCGA CCGCCGACGT GGCGTCGGGT GACCGTGCCG CCTCGCTGAC CTCGATGGTC
CTGCCGGAAC TGCGCGCGCT GGCGCGCCAG ATCGGCGTCG AAGGCGCCTC CGGCATGCGC
AAGAGCGAAC TGATCGCCGC GATCCGCGAA CGCCGCGGCG ACGGCGGTGC CGCCAAGGCG
GAGAGCGCCG CCGCACCGCA GACGCCCCCG CGCCGTGAGC GTCGCAGCGC ATCGCGTCAG
GCCGGCGCCG CCGAGGCCAA GGCTCCAGAG GCCCTCGAGG CCAAGGCCCC CGAGGTGAAG
GCCCCCGAGG TGAAGGCCCC CGAGGTGAAG GCTGATGCAC CGGCCGAAGA GGCCGCTGCG
GAGCCCAAGA CCGAGCGGCC CAGGAACGAC CGCACCAAGG CCGAGAAGCC CGCGGCGCAG
CAGCCCGACG GCGAGCAGCC CAAGGGAGAC CAGCCGAAGG GCGAGCAGTC CAGGGGCGAT
CAGCGCCGGT CCGATCGTCC GCGGGGCGAT CAGTCCGACA CCAGGTCCGA CGACCGGTCC
GACAGTGACC AGCAGCAGGG CCAGGGCAAC CGAAACAACA GCAACAACAG CGCCGATGGC
GACGACGACG GCGACGGCCG GGGTGGCCGC CGCGGCCGCC GGTTCCGCGA CCGCCGGCGC
CGTGGTGAGC GCGGTGGCGA GGGCGGCGGC GGTGGCGATA CCGAGATCCG CGAGGACGAC
GTCGTCCAGC CCGTCGCCGG CATCCTCGAC GTCCTCGACA ACTACGCGTT CGTCCGCACC
TCGGGCTACC TGCCCGGTCC GAACGACGTC TACGTGTCGA TGAACATGGT GCGCAAGAAC
GGGCTGCGCC GCGGCGACGC CGTCACCGGT GCGGTCAAGG TGCCCAAGGA GGGCGAAGGC
GGCGGTCAGA ACCAGCGCCA GAAGTTCAAT CCGCTGGTGC GTCTCGACAG CGTCAACGGC
GGGCCGGTCG AGGATGCGAG GAAGCGTCCC GAATTCGGCA AGCTGACCCC GCTGTACCCC
AATCAGCGGC TGCGTCTGGA GACCTCTCCG GACAAGCTGA CCACCCGCGT CATCGACCTG
ATCATGCCGA TCGGCAAGGG GCAGCGCGCG CTGATCGTGT CGCCGCCCAA GGCCGGTAAG
ACCACGATCA TGCAGGACAT CGCCAACGCG ATCACCCGCA ACAACCCGGA ATGCCACCTG
ATGGTGGTGC TCGTCGACGA GCGTCCGGAA GAGGTCACCG ACATGCAGCG CTCGGTCAAG
GGTGAGGTCA TCGCCTCGAC CTTCGACCGG CCGCCGTCCG ACCACACCAC GGTCGCCGAA
CTGGCCATCG AGCGCGCCAA GCGCCTGGTG GAGCAGGGCA AGGACGTCGT GGTGCTCCTC
GACTCGATCA CCCGCCTCGG CCGGGCCTAC AACAACGCCT CGCCGGCCTC GGGCCGCATC
CTGTCCGGTG GTGTGGACTC GACCGCGTTG TACCCGCCGA AGCGCTTCCT GGGTGCCGCA
CGCAACATCG AAGAGGGCGG CTCACTGACC ATCGTCGCGA CCGCGATGGT GGAGACCGGT
TCGACCGGTG ACACGGTCAT CTTCGAGGAG TTCAAGGGCA CCGGTAACGC CGAGCTCAAG
CTCGATCGCA AGATCGCCGA ACGCCGGGTG TTCCCCGCGG TCGACGTGAA CCCGTCGGGC
ACCCGTAAGG ACGAGCTGCT GCTCGGCCCC GACGAGTTCG CGATCGTGCA CAAGCTGCGC
CGGGTGCTGT CGGGTCTCGA CAGCCATCAG GCCATCGACC TGCTGATGAG TCAGCTGCGC
AAGACCAAGA CGAACTACGA GTTCCTGGTG CAGGTCTCCA AGAACACACC GGGGTCGGTG
GACAACGACT GA
|
|---|
| Protein sequence | MTDTDLFTAD SAERTELPNV VNTETSTASE GPAVTTTTAE SAPTADVASG DRAASLTSMV
LPELRALARQ IGVEGASGMR KSELIAAIRE RRGDGGAAKA ESAAAPQTPP RRERRSASRQ
AGAAEAKAPE ALEAKAPEVK APEVKAPEVK ADAPAEEAAA EPKTERPRND RTKAEKPAAQ
QPDGEQPKGD QPKGEQSRGD QRRSDRPRGD QSDTRSDDRS DSDQQQGQGN RNNSNNSADG
DDDGDGRGGR RGRRFRDRRR RGERGGEGGG GGDTEIREDD VVQPVAGILD VLDNYAFVRT
SGYLPGPNDV YVSMNMVRKN GLRRGDAVTG AVKVPKEGEG GGQNQRQKFN PLVRLDSVNG
GPVEDARKRP EFGKLTPLYP NQRLRLETSP DKLTTRVIDL IMPIGKGQRA LIVSPPKAGK
TTIMQDIANA ITRNNPECHL MVVLVDERPE EVTDMQRSVK GEVIASTFDR PPSDHTTVAE
LAIERAKRLV EQGKDVVVLL DSITRLGRAY NNASPASGRI LSGGVDSTAL YPPKRFLGAA
RNIEEGGSLT IVATAMVETG STGDTVIFEE FKGTGNAELK LDRKIAERRV FPAVDVNPSG
TRKDELLLGP DEFAIVHKLR RVLSGLDSHQ AIDLLMSQLR KTKTNYEFLV QVSKNTPGSV
DND
|
|---|
| |