Gene Mjls_1172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMjls_1172 
Symbol 
ID4876909 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMycobacterium sp. JLS 
KingdomBacteria 
Replicon accessionNC_009077 
Strand
Start bp1248883 
End bp1250268 
Gene Length1386 bp 
Protein Length461 aa 
Translation table11 
GC content66% 
IMG OID640138481 
Productglutamate decarboxylase 
Protein accessionYP_001069466 
Protein GI126433775 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0076] Glutamate decarboxylase and related PLP-dependent proteins 
TIGRFAM ID[TIGR01788] glutamate decarboxylase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.615591 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0977769 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCGCA CGCACAGTCG CGTCCAGCAC GTCTCGCCCG CCTACACCGG CAGGTTGGCG 
ATGGCGCCGG TGCCGTCACT GCGGCTGCCC GACGAGGCGA TGGAACCCCA GGCGGCCTAC
CGGTTCATCC ACGACGAACT CATGCTCGAC GGCAGCTCGC GGCTCAACCT CGCCACCTTC
GTCACCACGT GGATGGACCC CGAGGCCGAG AAGCTGATGG CCGAGACGTT CGACAAGAAC
ATGATCGACA AGGACGAGTA CCCGGCGACC GCGGCGATCG AGCAGCGTTG CGTGTGCATG
GTGGCCGACC TGTTCCACGC CGAGGATCTG CGCGACGACG ACCCGAACAG CGCGATCGGG
GTGTCGACGA TCGGGTCGAG CGAGGCGGTC ATGCTCGCCG GGCTGGCGAT GAAATGGCGT
TGGCGCCAGC GCCTCGGCGG CGATGCGTGG AAGGGCCGCA CCCCGAATCT GGTGATGGGG
TCGAACGTCC AGGTGGTGTG GGAGAAGTTC TGCCGCTACT TCGACGTCGA ACCGCGCTAT
CTGCCGATGG AGGACGGTCG CTACGTCATC ACTCCGGAGC AGGTGCTCGA GCACGTCGAC
GAGGACACCA TCGGAGTGGT GGCGATCCTG GGCACCACCT ACACCGGTGA ACTGGAGCCC
ATCGGGGAGA TCTGCGCCGC GCTCGACAAA TTGGCCGCAG ACGGGGGTGT CGACGTGCCC
GTCCACGTCG ACGCCGCCAG CGGCGGGTTC GTGGTGCCGT TCCTGCATCC GGATCTGGTG
TGGGACTTCC GGTTGCCGCG GGTGGTGTCG ATCAACGTCA GTGGACACAA GTACGGGCTC
ACCTATCCCG GCATCGGGTT CGTGGTGTGG CGCAACGCCG AGCAGCTACC CGAGGAACTG
GTGTTCCGGG TCAACTACCT CGGCGGCGAC ATGCCGACGT TCACGCTGAA CTTCTCTCGT
CCCGGTAACC AGGTGGTCGG CCAGTATTAC AACTTCCTGC GGTTGGGTCG CGGCGGCTAC
GCGCAGGTCA TGCAGTCGCT GTCGCAGACC GCCCGGTGGC TGGGCGACGA ACTGCGCGAC
AGCGAGCATT TCGAGTTGAT CACCGACGGT TCGGCGATCC CGGTCGTGAG CTTCCGGTTG
AAGGGCGACC CGGGCTACAC CGAGTTCGAC ATCTCGCAGA CGTTGCGCTC CTACGGCTGG
CAGGTGCCCG CGTACACCAT GCCCGAGGGC GCCGAGGACG TCACGGTGCT CAGGGTCGTG
GTACGCGAGG GGTTTTCCGC CGATCTGGCC CGCGCGCTGC GCGACGACAT GGTCACGGTG
CTCAAGCATC TCGACGAGCT CAAGCCGGGT GGCCACTTCG ATGAGGTGCA GCCGTTCGCC
CATTAG
 
Protein sequence
MSRTHSRVQH VSPAYTGRLA MAPVPSLRLP DEAMEPQAAY RFIHDELMLD GSSRLNLATF 
VTTWMDPEAE KLMAETFDKN MIDKDEYPAT AAIEQRCVCM VADLFHAEDL RDDDPNSAIG
VSTIGSSEAV MLAGLAMKWR WRQRLGGDAW KGRTPNLVMG SNVQVVWEKF CRYFDVEPRY
LPMEDGRYVI TPEQVLEHVD EDTIGVVAIL GTTYTGELEP IGEICAALDK LAADGGVDVP
VHVDAASGGF VVPFLHPDLV WDFRLPRVVS INVSGHKYGL TYPGIGFVVW RNAEQLPEEL
VFRVNYLGGD MPTFTLNFSR PGNQVVGQYY NFLRLGRGGY AQVMQSLSQT ARWLGDELRD
SEHFELITDG SAIPVVSFRL KGDPGYTEFD ISQTLRSYGW QVPAYTMPEG AEDVTVLRVV
VREGFSADLA RALRDDMVTV LKHLDELKPG GHFDEVQPFA H