| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mjls_0215 |
|---|
| Symbol | |
|---|
| ID | 4875961 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium sp. JLS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009077 |
|---|
| Strand | + |
|---|
| Start bp | 229090 |
|---|
| End bp | 230691 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640137529 |
|---|
| Product | protein of unknown function DUF894, DitE |
|---|
| Protein accession | YP_001068519 |
|---|
| Protein GI | 126432828 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.155573 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.878116 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACAC CGCAAACACG ACCCGTGGTG TCCTCGTGGG CGCCGTTCTC GTCTCCTGTC
TACCGCGCGC TGTGGATCGC GCAGTTCGTC TCGAACCTCG GCACGTGGAT GCAGACGGTG
GGTGCACAGT GGATGCTGGT CGGCGACCCC GGTGCCGCGG TACTCGTGCC GCTGGTGCAG
ACCGCGACGA CGCTGCCGAT CATGCTGCTG GCGTTGCCGT CGGGTGTGCT CGCCGATCTG
ATCGACCGGC GCCGGCTGCT GATCGCCACC CAGGCCGCGA TGGCGTCGGG GGTGGCGGCG
CTGGCGATGC TGACCGGCTT CGGCCTCGCG ACACCCACCG TGCTGCTGCT TCTGCTCTTC
CTGATCGGGT GTGGGCAGGC CCTGACGACG CCGGCGTGGC AGGCCATTCA ACCGGAACTC
GTCCCGCGCG AACAGATTCC GGCCGCGGCG GCGTTGGCCA GCATGAGCGT GAACGGCGCC
CGGGCGATCG GCCCGGCGGT CGCCGGCGTC CTGGTGTCGC TGTCGGGGCC CACCACGGTG
TTCGCGCTCA ATGCGTTCTC GTTCATCGGC ATCGTCATGG TGCTGCTCTG GTGGCGGCGG
CCCGTGGAGG AGGCGACGAT GCCTCTCGAG CGGCCGATAT CGGCGCTGAG CGCCGGCCGG
CGGTACATCC GCAGCTCACC GGTGATCCGG CGGATCCTGT TGCGGACCGT GCTGTTCACC
GCACCCGCCA GCGCGCTGTG GGGCCTGCTC GCGGTGATCG CCGCCAACCA GCTGAACCTG
TCGTCGTCGG GGTACGGGCT GCTGCTCGGC GCGCTGGGTG TCGGGGCGGT GCTGGGTGCG
GTGGTGTTGT CGCGGCTGCA TGCCCGCTTC GGCCAGAACC AGCTGATGGT GATGGGTGCG
GTCGGTTTCG CCGGTGCCAC CGTGGTACTC GCGACGGTGC ACGTGCTGGC CGCGGTGCTC
GCCGCGCTGG TGGTGGGCGG GGTGGCGTGG CTGCTCACGA TGTCGACCCT CAACGCCTCG
ATGCAGCTGA GCCTGCCCGC CTGGGTGCGG GCGCGCGGAC TGTCGGTCTA CCAGTTGGTC
TTCACCGGAA GTCAGGCGAT CGGCTCGTTG GTCTGGGGTG TGGTCGCGGG CGCGACGAGC
GGGGTGACGG CGTTGCTGAT CAGCGCTGCC CTGCTGATCG TGTGCGGGGT GTCGGTCGCA
TGGTGGCCGC TGCACCCGGC CACCGGCACG CTCGACGTGA CGCCGTCGGC GCACTGGGGT
GAGCCGGCGC TGGTGTTCGA GCCCGATCCG CAGGACGGAC CGGTGGTGGT GCTGCAGTCC
TACGTCGTGG CGCCGGAGGA CGAGGCGGGT TTCCTGGCGC TCATGCAGCG GGTCCGGCGG
TCTCGGCAGC GGACCGGCGC GATGGAGTGG GGGATCTTCC GCAGCGGCGA GTCCGCCGAC
ACCTTCGTGG AACTCTTCCT CGTCCGGTCA TGGGACGAAC ATCTGCGCCA GCATCTGGTG
CGCCAGACCG CCCTCGATCT GGCCCTCGAG CGTGAGATCG AGGGCTACGT CCACGGCGAG
TCGACGCTGC GGCATTTCAT CGCGGTGCGG AACGGGCGTT GA
|
|---|
| Protein sequence | MATPQTRPVV SSWAPFSSPV YRALWIAQFV SNLGTWMQTV GAQWMLVGDP GAAVLVPLVQ
TATTLPIMLL ALPSGVLADL IDRRRLLIAT QAAMASGVAA LAMLTGFGLA TPTVLLLLLF
LIGCGQALTT PAWQAIQPEL VPREQIPAAA ALASMSVNGA RAIGPAVAGV LVSLSGPTTV
FALNAFSFIG IVMVLLWWRR PVEEATMPLE RPISALSAGR RYIRSSPVIR RILLRTVLFT
APASALWGLL AVIAANQLNL SSSGYGLLLG ALGVGAVLGA VVLSRLHARF GQNQLMVMGA
VGFAGATVVL ATVHVLAAVL AALVVGGVAW LLTMSTLNAS MQLSLPAWVR ARGLSVYQLV
FTGSQAIGSL VWGVVAGATS GVTALLISAA LLIVCGVSVA WWPLHPATGT LDVTPSAHWG
EPALVFEPDP QDGPVVVLQS YVVAPEDEAG FLALMQRVRR SRQRTGAMEW GIFRSGESAD
TFVELFLVRS WDEHLRQHLV RQTALDLALE REIEGYVHGE STLRHFIAVR NGR
|
|---|
| |