Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_3600 |
Symbol | gabP |
ID | 4901748 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009076 |
Strand | - |
Start bp | 3505874 |
End bp | 3507637 |
Gene Length | 1764 bp |
Protein Length | 587 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640136826 |
Product | GABA permease |
Protein accession | YP_001067831 |
Protein GI | 126454606 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
TIGRFAM ID | [TIGR01773] gamma-aminobutyrate permease |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.18864 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGCCGTGT CGAGCGAATC GCGCGGCCGC CGCGCGTTCG TCGATTCACC AAGTGGTTCT ATCGGAATTC GTGAATTGGT TCTTAGTCGC GAACCGTTTG ATGCTTACAC TGCATCGCTT CGAAGGCGGC CGATCACGAT GCCGACGACA GGCGCGCCGC GATGCGCCGC CGCGATGCGC GGCGCATCGC GAACGCAGCC TCGCAGACCT GCGTGGCGCA CCTGTCCGGG CGGCCGCAGG CATGACGTCC GATCGGCGCG CGGCGCGCAT TGCGCCGCGC ACGGTTCGAT AACAACAAAG CCCCCGCGCC GCCTTCATGC GATGCCCGGT CACACCGGAA CCGTTTTTTT GGAGGGAGAC ATGGAAGGAA GTCAGACAGG CCTCGGAACC GGCCTGAAGC AGCGTCACGT CACGATGCTG TCGATCGCGG GCGTGATCGG CGCCGGGTTG TTCGTCGGTT CGGGGCATGC GATCGCGGAG GCCGGGCCGG CCGCGCTGAT CGCGTACGCG ATCGCGGGGC TGCTCGTCGT GCTCGTGATG CGCATGCTCG GCGAGATGGC GGTTGCGCAG CCGGACAGCG GTTCGTTCTC GACCTACGCC GATCGCGCGA TCGGCCATTG GGCGGGCTTC ACGATCGGCT GGCTCTACTG GTGGTTCTGG GTGCTCGTGA TTCCGATCGA GGCGACGGCC GCCGCGACGA TCCTCAATGC GTGGTTCCCC GGCGTCGCGA CATGGATCTT CGCGCTCGGC ATCACGTCGG TGCTCACCGT CACGAATCTC TTCTCGGTCA AGAACTACGG CGAATTCGAA TTCTGGTTCG CGCTCATCAA GGTGGTGGCG ATCGTGGTGT TCCTCGCGAT CGGCGGCGCG GCGATCGTCG GCCTGCTGCC GGGCTCGAAC GTATCGGGCG CGGCGCGCCT CGTGAACGCG GGCGGCTTCA TGCCGAACGG CGTCGGCGCG GTGCTCGCCG CGATGCTGAC GACGATGTTC TCGTTCCTCG GCACCGAGAT CGTCACGATC GCCGCGGCCG AATCCGAGCA TCCGGAGCGC CAGATCGTCC GCGCGACGAA TTCGGTGATC TGGCGCATCT CGCTGTTCTA TCTCGGCTCG ATCTTCGTCG TCGCGGCGCT CGTGCCGTGG AACGACGCGC TGCTGCCCGC GCACGGCTCG TATCAGCGCG CGATGGAGCT GATCGGCGTG CCGCACGCGA AGGGCATCAT CGACGTGATC GTGCTGGTGT CGGTTGCGAG CTGCCTGAAT TCGGCGCTCT ACACGGCGTC GCGCATGATC TTCTCGCTGT CGACGCGCGG CGACGCGCCG GCATTCTTGC GCCGCACCGA TGCAAGCGGC ACCCCGCGCG CGGCGGTGCT CGCGTCGACG GCGTTCGGCT TTCTGACGGT GATCGCGAAC TACGTGATGC CCGAGCAGGT GTTCGGCTTC CTGCTCGCGA CGTCGGGCGC GATCGCGCTG CTCGTCTATC TCGTGATCGC GATCTCGCAA CTGCGGATGC GCTCGACGCT CGACGCGACG GGCGAGCGGC TGCCGCTGCG GATGTGGTGC TTTCCGTGGC TCACGTGGGC GGTGATCGTG TTCATCTGCG GCGTGCTCGT CGTGATGCTG CTGCGCGAGG ATCACCGGAT GGAAGTCGGC GCGACCGCGG TGCTTGCGCT CGCCGTCGTC GTCGCATCGC GGATGAACCG GCGCGCGCGC GGCGGCGACG AGCCGACGCC CGCCGCGTCG CGAGTGTCCG CTAACCTGCG GTGA
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Protein sequence | MAVSSESRGR RAFVDSPSGS IGIRELVLSR EPFDAYTASL RRRPITMPTT GAPRCAAAMR GASRTQPRRP AWRTCPGGRR HDVRSARGAH CAAHGSITTK PPRRLHAMPG HTGTVFLEGD MEGSQTGLGT GLKQRHVTML SIAGVIGAGL FVGSGHAIAE AGPAALIAYA IAGLLVVLVM RMLGEMAVAQ PDSGSFSTYA DRAIGHWAGF TIGWLYWWFW VLVIPIEATA AATILNAWFP GVATWIFALG ITSVLTVTNL FSVKNYGEFE FWFALIKVVA IVVFLAIGGA AIVGLLPGSN VSGAARLVNA GGFMPNGVGA VLAAMLTTMF SFLGTEIVTI AAAESEHPER QIVRATNSVI WRISLFYLGS IFVVAALVPW NDALLPAHGS YQRAMELIGV PHAKGIIDVI VLVSVASCLN SALYTASRMI FSLSTRGDAP AFLRRTDASG TPRAAVLAST AFGFLTVIAN YVMPEQVFGF LLATSGAIAL LVYLVIAISQ LRMRSTLDAT GERLPLRMWC FPWLTWAVIV FICGVLVVML LREDHRMEVG ATAVLALAVV VASRMNRRAR GGDEPTPAAS RVSANLR
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