| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_3492 |
|---|
| Symbol | |
|---|
| ID | 4902222 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009076 |
|---|
| Strand | - |
|---|
| Start bp | 3396846 |
|---|
| End bp | 3398480 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640136718 |
|---|
| Product | serine carboxypeptidase family protein |
|---|
| Protein accession | YP_001067729 |
|---|
| Protein GI | 126454227 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2939] Carboxypeptidase C (cathepsin A) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.547458 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGCAC GTAAAGCGCA GCTGTTATTA GCCGCGGTAT TCTCTTCGCT GCTGATCGCG
GCGTGTAACG GAGACGATGC CGGTTCGCCC GCGAGCGCCG CGGCGAGCGA GAACAGTTCG
GGCAACATCG ATGCCTCGTC CGGCGCGGAC AAGCCCTATC GGGATCCCAA CCGTTATTCG
TCGAGCGGCA GCGCTTCGCT GTCGCCTTCC GCGGTGACCG AGAACGCCGC GATCACGCAT
CACCAGATCA CGGTGAACGG CAAGACGATC AACTACACCG CGACCGCCGG CCACCTGAGC
GCGCGCAACC CGCAAAGCGG CGCCGCCGAA GCGTCGTTCT TCTATGTCGC GTACACGGCC
GACAATCAGC CGCTCGGCAA GCGGCCCGTC ACGTTTTTCT ACAACGGCGG GCCGGGCTCG
TCGACGGTCT GGCTGCATCT CGGCTCGTTC GGGCCCAAGC GCCTCGTGAC GGGCGATCCG
AACGCGAACA GCCCGACGCC GTTCCCGTTC GTCGACAACC AGGAAACGCT CCTCGACACG
ACCGATCTCG TGTTCGTCGA CGCGATCGGC ACCGGTTTCT CGGAGGCGAT CGCGCCGAAC
ACGAACCAGA CGTTCTGGGG CGTCGATCAG GATGCCGGAG CATTTCGCGA TTTCGTGATC
CGCTATCTGC AGGTGAATCA GCGCAACGAT TCGCCGAAGT ACCTGTTCGG GGAATCGTAC
GGCACGCCGC GCACCGACGT GCTCGCGAAC CTGCTCGAGA CGGCGGGCGT GAAGCTCGAC
GGCATCGTGC TGCAATCGTC GATCCTCAAC TACAACAGCA ACTGCGACAT GGCGAGCAAC
TCCGTCGGCG GCTCGAACAG CGGCTCGAGC GCGGTGAGCT GCGCAGGCTT CGTGCCGAGC
TACGGCGCGA TCGGCGCGTA TTACCAGCTC GACAACCCGA ATCCGACGAA CCTGCCGCAG
TATGCGGACC AGATGCGTTT GCTCACGGCG GGCACCTATT CGCCGGCCGT GGACGCGTAC
CTCGCGAACC ATACGCCGCC TTCGTCGAGC CTCGTCACGA CGATGTCGAA CGCAACGGGC
GCGACCGTGC CGCTCTGGCG CGCGAACTTC AACCTGCTGC CGACTTCGTA TGACAACAGC
TACCAGCTCG CGCTGATTCC GGGTACGCTG ATCGGCCGCT ACGACGCGCG CGTGAACGTG
CCGACGAACA GCCCGCTCGC GTCGGACGGC GATCCGTCGA GCAGCTTCAT CACGAAGCCG
TTCACCGATA CGATCGGCAC CTATTTGCCG AACGTGCTCA AGTACACGGC GAAATCGGCC
TATGCTGTGC AGAGCAACGC GATTGCCTCG TGGGACTGGA GCCACGACGG CCTCGATCTG
CCCGACACGA TCCCCGATCT GGCCGCGGCG CTCACGCTCA ATCCCGCGCT GAAGGTGCTG
TCGCTGAACG GCTATCACGA CATCGCGACG CCGTTCTATC AGACGGAACT CGATCTTGCC
CGTCTCGGCG CGCAGCCGAA CCTGACGATC AAGGATTACC AGGGCGGGCA CATGGTCTAC
CTGGACGATA CGTCCCGGCC GCAGGAAAAA GCCGATCTGG CGACGTTCTA CGCGGCGGCG
CCTGCCGCGC GATGA
|
|---|
| Protein sequence | MPARKAQLLL AAVFSSLLIA ACNGDDAGSP ASAAASENSS GNIDASSGAD KPYRDPNRYS
SSGSASLSPS AVTENAAITH HQITVNGKTI NYTATAGHLS ARNPQSGAAE ASFFYVAYTA
DNQPLGKRPV TFFYNGGPGS STVWLHLGSF GPKRLVTGDP NANSPTPFPF VDNQETLLDT
TDLVFVDAIG TGFSEAIAPN TNQTFWGVDQ DAGAFRDFVI RYLQVNQRND SPKYLFGESY
GTPRTDVLAN LLETAGVKLD GIVLQSSILN YNSNCDMASN SVGGSNSGSS AVSCAGFVPS
YGAIGAYYQL DNPNPTNLPQ YADQMRLLTA GTYSPAVDAY LANHTPPSSS LVTTMSNATG
ATVPLWRANF NLLPTSYDNS YQLALIPGTL IGRYDARVNV PTNSPLASDG DPSSSFITKP
FTDTIGTYLP NVLKYTAKSA YAVQSNAIAS WDWSHDGLDL PDTIPDLAAA LTLNPALKVL
SLNGYHDIAT PFYQTELDLA RLGAQPNLTI KDYQGGHMVY LDDTSRPQEK ADLATFYAAA
PAAR
|
|---|
| |