Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_3364 |
Symbol | secD |
ID | 4903122 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009076 |
Strand | + |
Start bp | 3284215 |
End bp | 3286239 |
Gene Length | 2025 bp |
Protein Length | 674 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640136590 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001067601 |
Protein GI | 126454226 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCGTT ATCCAATCTG GAAATATGTG GTGATGGTCG TGGCGCTCGC CATCGGCTTT CTGTACACAT TGCCCAACTT CTTCGGCGAA GCGCCGGCGG TGCAGGTATC GAGCGGCAAG GCCACGGTCA AGCTCGGCGC CGACACGCTC GCGCAGGTCG AAGCAGCGCT CAAGGCCAAC CAGGTCGCGG CCGACGACGT CACGTTCGAC AATTCCAGCG CCAACGCGAC CATCCGCGTG CGCCTGAAGG ACACCGACAC GCAATTGCGC GTGAAGGACA TGCTGCAAAA GACGCTGAAC GCCGATCCGA ACGATCCGCA GTACGTCGTC GCGTTGAACC TGCAGAGCGC GTCGCCGCGC TGGCTGACCG CGCTGCACGC GCTGCCGATG TATCTCGGCC TCGATCTGCG CGGCGGCGTC CACTTCCTGC TGCAAGTCGA CATGACGGGC GCGCTCACGA AGAAGCTCGA TTCCGACGCG TCCGACGCCC GCACGCAACT GCGCGACAAG GGCATTCGCG ACGGCGGCGT CGCCCGCGTC GATCAGACGG TCGTCGCGAA CTTCGCCGAC CAGGACACCG CCGAGCAAGC GCGCAAGCTG CTCGCCTCGT CCGTCTCCGA ACTCCAGTGG GCGACGCAGC CGGGCGGCGG CGGCTATCAG GTCGTCGGCA CGTTCACGCC GGCCGTCCAG AAGGCCGTCG AGGAAGCGGC GCTCAAGCAG AACCTGACGA CGCTGCACAA CCGCGTCAAC GAACTCGGCG TGTCCGAGCC GATCCTCCAG CAGCAGGGCA ACGACCGGAT CGTCGTCGAG CTGCCGGGCG TGCAGGACAC CGCGAAGGCG AAGGACATCA TCGGCCGCAC CGCGACGCTC GAGGCGCGCC TCGCCGATCC GCTGAACACG CACCCGAATC CGAACGATCC GGTGCCGCCG GGCGAGGAAC TGTTCACGCA GGGCAACCAG GCGCCGGTGC TGCTCAAGAA GCAGGTGATC TTCACGGGCG ACCGCATCAT CGACGCGTCC GCGGGCTTCG ACGAGCATCA GCGTCCGTCC GTGAACATCC GCCTCGATTC GGCGGGCGGC CGCGCGGTGC GCGCGGTGTC GCGCGAGAAC ATCGGCAAGC CGATGGCGAT GGTGCTGTTC GAGAAGGGCA AGGGCGAAGT GCTGACCGTC GCGACGATCC AGTCGGAGCT CGGCGACCGC TTCCAGATCA CGGGCCAGCC GACCCCGCAG GCGGCCGCCG ATCTCGCACT GCTGCTGCGC GCGGGCTCGC TCGCCGCGCC GATGGACATC ATCGAGGAAC GCACGATCGG CCCGAGCCTC GGCGCGGACA ACATCCGGAT GGGCTTCCAT TCGGTGATCT GGGGCTTCGT CGCGATCGCC GTGTTCATGA TCGCGTACTA CATGCTGTTC GGCGTCGTAT CGGTGCTCGG CCTGTCGGTG AACCTGCTGC TGCTCGTCGC GGTGCTGTCG CTGATGCAGG CGACGCTCAC GCTGCCCGGC ATCGCGGCCA TCGCGCTCGC GCTCGGCATG GCGATCGACT CGAACGTGCT GATCAACGAG CGCATCCGCG AGGAGCTGCG CCGCGGCGCA TCGCCGCAGA TCGCGATCCA GGAAGGCTAC GCGCACGCGT GGGCGACGAT TCTCGATTCG AACGTGACGA CGCTGATCGC GGGCCTCGCG CTGCTCGCCT TCGGCTCGGG CCCGGTGCGC GCGTTCGCGA TCGTGCACTG CCTCGGCATC CTGACGTCGA TGTTCTCCGC GGTGTTCTTC TCGCGCGGCC TCGTGAACCT CTGGTACGGC GGGCGCAAGA AGCTGCAGTC GCTCGCGATC GGCCAGGTGT GGCGCCCCGC CGCCGAAGCC GGCACCGCGC CGCAGCTCGG CCAGGACGCG CGCGCGAGCG CGCCGCAGCC CGGCGCGCGC GTCGCCGCGC CGAAGCAGCC GGCGGGCGCG CCGCGCACCG GCAAGCCGGT CGCGCGCCGC CGCTCGGGCC CGGGCGTGCC GCCCAAGCAG GGCTCGTCCA ACTAA
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Protein sequence | MNRYPIWKYV VMVVALAIGF LYTLPNFFGE APAVQVSSGK ATVKLGADTL AQVEAALKAN QVAADDVTFD NSSANATIRV RLKDTDTQLR VKDMLQKTLN ADPNDPQYVV ALNLQSASPR WLTALHALPM YLGLDLRGGV HFLLQVDMTG ALTKKLDSDA SDARTQLRDK GIRDGGVARV DQTVVANFAD QDTAEQARKL LASSVSELQW ATQPGGGGYQ VVGTFTPAVQ KAVEEAALKQ NLTTLHNRVN ELGVSEPILQ QQGNDRIVVE LPGVQDTAKA KDIIGRTATL EARLADPLNT HPNPNDPVPP GEELFTQGNQ APVLLKKQVI FTGDRIIDAS AGFDEHQRPS VNIRLDSAGG RAVRAVSREN IGKPMAMVLF EKGKGEVLTV ATIQSELGDR FQITGQPTPQ AAADLALLLR AGSLAAPMDI IEERTIGPSL GADNIRMGFH SVIWGFVAIA VFMIAYYMLF GVVSVLGLSV NLLLLVAVLS LMQATLTLPG IAAIALALGM AIDSNVLINE RIREELRRGA SPQIAIQEGY AHAWATILDS NVTTLIAGLA LLAFGSGPVR AFAIVHCLGI LTSMFSAVFF SRGLVNLWYG GRKKLQSLAI GQVWRPAAEA GTAPQLGQDA RASAPQPGAR VAAPKQPAGA PRTGKPVARR RSGPGVPPKQ GSSN
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