Gene BURPS1106A_3065 details

Gene Information

• Locus tag: BURPS1106A_3065
• Symbol: ribD
• ID: 4901288
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1106a
• Kingdom: Bacteria
• Replicon accession: NC_009076
• Strand: +
• Start bp: 2995111
• End bp: 2996247
• Gene Length: 1137 bp
• Protein Length: 378 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 640136291
• Product: riboflavin biosynthesis protein RibD
• Protein accession: YP_001067304
• Protein GI: 126453712
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0117] Pyrimidine deaminase; [COG1985] Pyrimidine reductase, riboflavin biosynthesis
• TIGRFAM ID: [TIGR00227] riboflavin-specific deaminase C-terminal domain; [TIGR00326] riboflavin biosynthesis protein RibD

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.673728
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCTCGG AAAGCGACTT CACCCACATG CAGCGCGCGC TCGCGCTCGC CGCGCGCGGG 
ATGTACACGA CGACGCCGAA CCCGCGCGTC GGCTGCGTGA TCGTCAAGGA CGACGTCGTG 
ATCGGCGAGG GCTTCACGCA GCCGGCCGGC CAGGATCACG CGGAAGTGCA GGCGCTGAAG 
GACGCGCGCG CGCGCGGTAA CGATCTGCGC GACGCAACCG TCTACGTGAC GCTCGAGCCG 
TGCAGCCACT TCGGCCGCAC GCCGCCGTGC GCGCACACGC TGATCGACGC GCGCGTCGGC 
AAGGTCGTCG CGGCGATGGA GGACCCGAAT CCGCAGGTAT CCGGGCGCGG CCTCGCGATG 
CTGCGCGATG CGGGCATCGA CGTGCGCTGC GGCCTGCTCG CGCACGAGGC GCACGAAATG 
AACATCGGCT TCGTGTCGCG GATGACGCGC GGCCGCCCGT GGGTGCGGAT GAAGACGGCC 
GCGTCGCTCG ACGGCCGCAC CGCGCTCGCG TCGGGCGAAA GCAAATGGAT CACGGGCGAC 
GCCGCGCGCG ACGACGGCCA CAAGTGGCGC GCGCGCGCCT GCGCGATCCT GACGGGCATC 
GGCACCGTGC GCGAGGACGA TCCGCAGCTC AACGTGCGCG GCGTCGACAC CCCGCGCCAG 
CCGCGCCGCG TGCTGATCGA CAGCCGCCTG GACATTCCGC TCGCCGCGCG CCTGCTCGAA 
GGCGGCTCGC TGCTCGTTTT CTGCGGCGCG CTCGACGCGC AGAGCGAGCC GCGCGCGGAC 
GCGCTGCGCG CGCGCGGCGC GGAGATCGTG CCGCTCGCGA ACGCGCGCGG CAAGGTCGAT 
CTGCCCGCGA TGCTCGCCGC GCTCGGCGAG CGCGGCATCA ACGAACTGCA CGTCGAGGCG 
GGCCACAAGC TGAACGGCTC GCTGCTGCGC GAGCGCTGCG TCGACGAGTT GCTCGTCTAT 
CTCGCGCCGA GCCTGCTCGG CGCGGACGCC GCGGCGATGT TCGATCTCGC CGCGCCGGCG 
TCGCTCGTCG ACCGCACGCG GCTCGCGTTC CACAGCGTCG AGCGCGTCGG CGACGACCTG 
CGCATTCTCG CGCGCTTCGC GAACGCTCAC GCGAGCGCCT CCCCTACTCA TTCATAA 

 

Protein sequence

MFSESDFTHM QRALALAARG MYTTTPNPRV GCVIVKDDVV IGEGFTQPAG QDHAEVQALK 
DARARGNDLR DATVYVTLEP CSHFGRTPPC AHTLIDARVG KVVAAMEDPN PQVSGRGLAM 
LRDAGIDVRC GLLAHEAHEM NIGFVSRMTR GRPWVRMKTA ASLDGRTALA SGESKWITGD 
AARDDGHKWR ARACAILTGI GTVREDDPQL NVRGVDTPRQ PRRVLIDSRL DIPLAARLLE 
GGSLLVFCGA LDAQSEPRAD ALRARGAEIV PLANARGKVD LPAMLAALGE RGINELHVEA 
GHKLNGSLLR ERCVDELLVY LAPSLLGADA AAMFDLAAPA SLVDRTRLAF HSVERVGDDL 
RILARFANAH ASASPTHS