| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_2442 |
|---|
| Symbol | |
|---|
| ID | 4900973 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009076 |
|---|
| Strand | + |
|---|
| Start bp | 2398824 |
|---|
| End bp | 2400044 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640135670 |
|---|
| Product | major facilitator family transporter |
|---|
| Protein accession | YP_001066702 |
|---|
| Protein GI | 126454280 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.508707 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCAAA CCGCGCTGCC GCGCGGCACG GTTGCGCTGT TCGCCGGTGC GAGCGGCTTG
AGCGTGGCGA ACGTCTACTA TGCGCAGCCG CTTCTCGACG CGCTTGCCGC GGATTTCACG
ATCGGCCGCG CGGCGATCGG CGGCGTCGTG ACCGCCACGC AAATCGGCTG CGCACTTGCG
CTGCTGTTGC TCGTGCCGCT CGGCGACCTC GTCGACCGCC GCCGGCTGAT GCTCGTGCAA
TCGCTCGCGC TCGCGGCAAC GTTGATCGCC GTCGGCTTCG CGTCGGCCAG CGCCGTGCTG
ATCGCCGGCA TGCTTGGCAC AGGGCTGCTC GGCACGGCGA TGACCCAGGG GCTCGTATCG
TACGCGGCGA GCGCCTCGGC CTCGCACGAG CGCGGGCGCG TGGTCGGCGC CGCGCAAGGC
GGCGTCGTGA TCGGGCTGTT GCTCGCGCGC GTGCTGGCGG GCTTCGTCGG CGACGTGGCG
GGATGGCGCG GCGTCTATTT CCTGTCGGCG GCGACGATGC TCGCGCTCGC GGCGCTGCTC
GCGCGCAAGC TGCCCGCCCT CGCGCCGGCA TCGCCGCGCA TCGGCTATCC GCGACTGATC
GCATCGCTGT TCGGCCTGCT GCGCGACGAG CGCGTCTTGC AGATCCGCGG GATGCTCGCG
ATGCTGATGT TCGCCGCGTT CAACATTTTC TGGAGTGCGC TCGCGCTGCC GCTCAGCGCG
CCGCCCTATA CGCTTTCGCA CACCGCGATC GGCGCATTCG GGCTCGTCGG CGCATTGGGC
GCGTTCGCCG CCGCGCGCGC CGGGCATTGG GCCGATCGCG GCTTCGGACA ACCGACGAGC
GCCGCGGCGC TCGCGCTGCT GCTCGCATCG TGGCTGCCGC TCGCCTTCAT GCCGATGTCG
CTATGGGCGC TCGTGCTCGG CATCGTGCTG CTCGATGCCG GCGGACAGGC GATTCACGTG
ACGAATCAGA GCATGATCTT CCGCGCGCGG CCGGATGCGC ACAGCCGGCT CATCGCCGCC
TACATGCTGT TCTATTCGGT CGGCAGCGGG CTCGGCGCGA TCGCGTCGAC GGCCGTCTAC
GCAACGCACG GATGGCGCGG CGTCTGCATG CTGGGCGCGG CCGTCAGCGC GGCGGCGCTC
ATATTCTGGG CGGCCACGGC GCGGCCGACG CCGAACGAAG CCGCGTCGGC GCATACGGCA
AACGGGCGGC TCCGGCGGTG A
|
|---|
| Protein sequence | MTQTALPRGT VALFAGASGL SVANVYYAQP LLDALAADFT IGRAAIGGVV TATQIGCALA
LLLLVPLGDL VDRRRLMLVQ SLALAATLIA VGFASASAVL IAGMLGTGLL GTAMTQGLVS
YAASASASHE RGRVVGAAQG GVVIGLLLAR VLAGFVGDVA GWRGVYFLSA ATMLALAALL
ARKLPALAPA SPRIGYPRLI ASLFGLLRDE RVLQIRGMLA MLMFAAFNIF WSALALPLSA
PPYTLSHTAI GAFGLVGALG AFAAARAGHW ADRGFGQPTS AAALALLLAS WLPLAFMPMS
LWALVLGIVL LDAGGQAIHV TNQSMIFRAR PDAHSRLIAA YMLFYSVGSG LGAIASTAVY
ATHGWRGVCM LGAAVSAAAL IFWAATARPT PNEAASAHTA NGRLRR
|
|---|
| |