Gene BURPS1106A_2400 details

Gene Information

• Locus tag: BURPS1106A_2400
• Symbol: ispF
• ID: 4900294
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1106a
• Kingdom: Bacteria
• Replicon accession: NC_009076
• Strand: -
• Start bp: 2364126
• End bp: 2364614
• Gene Length: 489 bp
• Protein Length: 162 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 640135628
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_001066660
• Protein GI: 126452393
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.543907
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATTTCA GAATCGGACA AGGCTACGAC GTGCACCAGC TCGTTCCCGG ACGCCCGCTC 
ATCATCGGCG GCGTGACGAT CCCTTACGAG CGGGGGCTGC TCGGCCACTC GGACGCCGAC 
GTGCTGCTGC ACGCGATCAC CGACGCGCTC TTCGGCGCGG CGGCGCTCGG CGACATCGGC 
CGCCACTTCT CCGACACCGA TCCGCGCTTC AAGGGCGCCG ACAGCCGCGC GCTGTTGCGC 
GAATGCGCAT CGCGCGTCGC GCAGGCGGGT TTTGCGATCC GCAACGTCGA CAGCACGATC 
ATCGCGCAGG CGCCGAAGCT TGCGCCGCAT ATCGACGCGA TGCGCGCGAA CATCGCGGCC 
GATCTCGACT TGCCGCTCGA TCGCGTGAAC GTGAAGGCGA AGACGAACGA GAAGCTCGGC 
TATCTCGGGC GCGGTGAGGG GATCGAGGCG CAGGCGGCCG CGCTCGTCGT GCGCGAAGCG 
GCCGCGTGA 

 

Protein sequence

MDFRIGQGYD VHQLVPGRPL IIGGVTIPYE RGLLGHSDAD VLLHAITDAL FGAAALGDIG 
RHFSDTDPRF KGADSRALLR ECASRVAQAG FAIRNVDSTI IAQAPKLAPH IDAMRANIAA 
DLDLPLDRVN VKAKTNEKLG YLGRGEGIEA QAAALVVREA AA