Gene BURPS1106A_2398 details

Gene Information

• Locus tag: BURPS1106A_2398
• Symbol: pcaC
• ID: 4901543
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1106a
• Kingdom: Bacteria
• Replicon accession: NC_009076
• Strand: +
• Start bp: 2363230
• End bp: 2363757
• Gene Length: 528 bp
• Protein Length: 175 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 640135626
• Product: 4-carboxymuconolactone decarboxylase
• Protein accession: YP_001066658
• Protein GI: 126454212
• COG category: [S] Function unknown
• COG ID: [COG2128] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR00777] alkylhydroperoxidase, AhpD family; [TIGR00778] alkylhydroperoxidase AhpD family core domain

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.539087
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAATTCA TCGAATCGAT TAAGGCTCAG ATTCCCGACT ACGCGAAGGA CATTCGCCTG 
AACCTCGACG GCACGATCTC GCGCTCGTCG CTCGAAGGCA CGGACGCGGT CGGCGCGGCG 
CTCGCCGCAG CCTTCGCGGC CAAGAGCCCG GTGCTCGTGA AGGCGATCCG CGAAGCGGGC 
GTGCTGTCGC CCGAGGAAAC CCAGGCGGCG CTGACGGCTG CCGCGCTGAT GGGGATGAAC 
AACGCCTGGT ATCCGTATGT CGAGATGGCC GACGACGCCG ACCTGAAGAC GCAGCGCGCC 
GAGCTGCGGA TGGGCGCGTA CGCCACGCAC GGCGGCGTCG ACAAGCGCAA GTTCGAGATG 
TACGCGCTCG CCGCGTCGAT CGTCGGCAAG TGCCACTTCT GCGTGAAATC GCACTACGCG 
TTGCTCAAGA ACGAACAAGG GATGACAGTC ACGCAACTGC GCGACGTCGG CCGGATCGCG 
GCAGTGATCA ATGCCGCCGC GCAAGTGATC TCGGCGGAAG GCAAGTAA 

 

Protein sequence

MEFIESIKAQ IPDYAKDIRL NLDGTISRSS LEGTDAVGAA LAAAFAAKSP VLVKAIREAG 
VLSPEETQAA LTAAALMGMN NAWYPYVEMA DDADLKTQRA ELRMGAYATH GGVDKRKFEM 
YALAASIVGK CHFCVKSHYA LLKNEQGMTV TQLRDVGRIA AVINAAAQVI SAEGK