| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_2250 |
|---|
| Symbol | |
|---|
| ID | 4900333 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009076 |
|---|
| Strand | + |
|---|
| Start bp | 2237065 |
|---|
| End bp | 2238621 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640135479 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001066514 |
|---|
| Protein GI | 126452028 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.239801 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCCG CGCCGGGCCG ACCGCCGCTC TGGAGCGCCG CGAACCTGCG CGGCGATTTC
TTTCCATGGG TGCTCGCGAT CGTCACCGGC CTCGATTACT TCGACAACGC CGCGTTCTCG
TTCTTCGCGA GCTACATCGC GGGTGGAATC AACGCGTCGC CGGACGAGCT CGTGTGGGCG
TCGAGCGCTT ACGCGGTGAC GGCCGTGCTC GGCATCCTGC AGCAGCAATG GTGGGTCGAC
CGGCTCGGTC ACCGGCGTTA CGTCGCCGGC TGCATGCTGA TGTTCTCGCT TGGCGCGATG
GCCGCGGCGG CGGCCGACAC GTCGCTGCAG CTCGCGTTCG CGCGCGGCTT TCAGGGCTAT
TTCATCGGCC CCATGATGGG CGCGTGCCGG ATCCTGATCC AGGTCAGCTT CGCGCCGAAG
GATCGCCCGC CCGCGACGCG CGCGTTCCTC ATCATGCTGC TGCTCGGCAG CGCGCTCGCG
CCGATCGCGG GCGGCCTGCT CGTCGCGCAC TTCACATGGC GCGCGCTGTT CGCCTGCACG
GCGCCGGCCG GCATCCTGTT CGCGGCGCTC GCGTTCGTCG CGCTGCCCGA TTCCGGCCAC
ACGCCGCCCG ACGAACGCGG CGGCGCGCAT TTCTGGCCGT ACGTGATCTT CGCGCTCGCG
CAAGGCGCGC TGCAGATCGT CATGCAGCAG GTGCGCTTCC AGCTCTTCGC CGGCTCGCCG
CTGCTCGTGC TGCTCGCCGC CGGCGGCCTC GCGGCGCTCG CGTGGTTCGG CCATCATCAG
TGGCATCATC CGGCGCCGCT CGTGCGGCTG CACGCGTTTC GCGAGCGCAC GTTCCGGGTC
GGCCTGCTGC TCTACCTGTT CTATTACTAC GAGACGACGG GCTACAGCTA TCTGATCTCC
CGCTTCCTCG AAACCGGGCT CGGCTATCCG ATCGAGAACG CCGGGCGGCT CGTCGGCACG
ATGTCGCTGA TCTCCGCGAG CGCGCTCTTC GTCTACCTGC GCTACGCGAA GCTTCTCACG
CACAAGAAAT GGATCATCGT GCCCGGCTTC GCGCTCGCCG CGTTCGCCGC GCTATGGATG
ACGCGGATGT CGCCCGAGGT CGGCGAAGCG GCGCTCGTCG CGCCGCTCCT GATGCGCGGG
CTGCTGCTCC TGTTCATCGT GCTGCCCGTC GCGAACCTGA CGTTTCGCGT GTTCGCGATC
GACGAGTATT CGCACGGCTA CCGGCTGAAG AACATCGTCC GGCAACTGAC GATTTCGTTT
GCGACCGCCT CCGTCATCAT CGTCGAGCAG CATCGGCTCG CCGTACATCA GACGCGGCTT
GTCGAGCAGG CGAACGTCTA CAATCCGCTG TTCCGGCAAA CCCTCGACAC GCTCACGCGC
GGCTTCGCGG CCGCGGGCCA CGCGTTCTCC GACGCGCACG CGCTCGCGCT CGTCACCGTG
AGCCGCACCA TCGCGCAACA GGCGTCGTTC CTGGCGTCGC TCGACGGCTT CTACTTCCTC
GCGGGCGTCG CGCTCTGCGG CGGCCTGTTC GCCGCCTGGC AAAAAGAGAT CGATTGA
|
|---|
| Protein sequence | MSAAPGRPPL WSAANLRGDF FPWVLAIVTG LDYFDNAAFS FFASYIAGGI NASPDELVWA
SSAYAVTAVL GILQQQWWVD RLGHRRYVAG CMLMFSLGAM AAAAADTSLQ LAFARGFQGY
FIGPMMGACR ILIQVSFAPK DRPPATRAFL IMLLLGSALA PIAGGLLVAH FTWRALFACT
APAGILFAAL AFVALPDSGH TPPDERGGAH FWPYVIFALA QGALQIVMQQ VRFQLFAGSP
LLVLLAAGGL AALAWFGHHQ WHHPAPLVRL HAFRERTFRV GLLLYLFYYY ETTGYSYLIS
RFLETGLGYP IENAGRLVGT MSLISASALF VYLRYAKLLT HKKWIIVPGF ALAAFAALWM
TRMSPEVGEA ALVAPLLMRG LLLLFIVLPV ANLTFRVFAI DEYSHGYRLK NIVRQLTISF
ATASVIIVEQ HRLAVHQTRL VEQANVYNPL FRQTLDTLTR GFAAAGHAFS DAHALALVTV
SRTIAQQASF LASLDGFYFL AGVALCGGLF AAWQKEID
|
|---|
| |