| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_2059 |
|---|
| Symbol | |
|---|
| ID | 4900467 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009076 |
|---|
| Strand | - |
|---|
| Start bp | 2045412 |
|---|
| End bp | 2046821 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640135289 |
|---|
| Product | HlyD family secretion protein |
|---|
| Protein accession | YP_001066324 |
|---|
| Protein GI | 126455129 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.356025 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTCA TTGCGGCGAT CTTCAGGCCG TTTCTGTCGC TGGCCGATGC GGTGCTCGGC
TACTTCGAGC GCCACGCCTT CGAACCGGCG TCGCCCGAGG GGCGGCAATC CTGGCGCGGC
AGCGCGTTGG GGCTCGAGGA GGCGTCCATT GCACCGGCGC GGCGTGCCGC CGCGCTGATC
CCGACGGTCA TGCTCGCGCT GCTGATCGTG CTCGTTCTGT GGGCCACGTT CTTCAAGATC
GACATCATTG CGGCGGGCCA GGGCAAGGTC ATTCCTTCCA CGACGGTTCA GCAACTCTCG
ACGCTGGAGG GCGGCATCGT GCGGGAGTTG CTCGTGCGTG AAGGGCAGAT CGTCAAGAAG
GGGCAGCCGC TCGTTCGACT CGATCCGGTC GTGGCGCAGG GCGCCGTGAC CGAGCAGGCC
GCCACGCGAG AGGGATTGAT GGCCTCGATT GCGAGATTGC AGGCTGAAGC CGACGGCAAG
GCAACGCCTT TGTATCCCGC CGGCCTGAAG CCGGAAATCG TGAGCGAGGA GGAGCACGTG
CGGGCGCAAC GGGCGGAGGC GCTGAATTCC ACCATCGAGG TGCTGCAGCA GCAGCGCGCC
GCCAAGCAGG CGGAGGCGGC CGACTACCGC GGCCGGATTC CGCAGTACGT GAACAATCAG
CATCTGTTGG ATGATCAGAT CCAGCGCATG TTGCCGCTGG TCGGAGTGGG GTCCGTGGCG
CCAAACGAGA TCACCAATCT CCAACGCGAG CGCGGCAATC TGGCCGCGCA GATCATCACG
ACACGCGAAG GCGCGGCACA GGCGTCCGCG CAGATTGCCG AAGCGAGCCA CAAAATCGAG
GAAAAGATCT CCACCTTCCG CAGCGAGGCG CGGGAAGAGC TGGCCAGAAA GCAGGTCCAG
CTGCAGGCGC TGGAGGGCAC GCTGTCCGGC AAGCAGGACA TCCTCGACCG GACGTTGATC
CGCTCCCCCG TGAACGGCAT CGTGAAGACG CTTTACATCA CAACGATTGG CGGTGTGGCA
TCGCCGGGCA AGAGCGTGAT CGACATCGTT CCGACCAACG ATTCGCTGCT GATCGAGGCT
CGCATCCAGC CGCAGGACAT TGCCTATATC AGGGTGGGAG ATGACGCCAA AGTCAGGATT
ACGGCGTTCG ACTCCGGCGC GCTGGGTTCG CTGGATGCGA AGGTCGAACT GATCAGCCCG
GACAGTCAGG CCGACGAGCG CAGTGGGAGC CTCTACTACA AGGTTCAGGT TCGCACGCAC
AGCAGCGTGG TGGCCACGCA GGTCGGCGAC CTGAACATCT TGCCGGGGAT GGTGGCCGAG
GTCGATGTGA TCACCGGGCG TCGGACCATC ATGTCCTATA TTCTGCGGCC GATCGTACGC
GGGATGAGTC GCGCGATGAG CGAGCGTTGA
|
|---|
| Protein sequence | MKLIAAIFRP FLSLADAVLG YFERHAFEPA SPEGRQSWRG SALGLEEASI APARRAAALI
PTVMLALLIV LVLWATFFKI DIIAAGQGKV IPSTTVQQLS TLEGGIVREL LVREGQIVKK
GQPLVRLDPV VAQGAVTEQA ATREGLMASI ARLQAEADGK ATPLYPAGLK PEIVSEEEHV
RAQRAEALNS TIEVLQQQRA AKQAEAADYR GRIPQYVNNQ HLLDDQIQRM LPLVGVGSVA
PNEITNLQRE RGNLAAQIIT TREGAAQASA QIAEASHKIE EKISTFRSEA REELARKQVQ
LQALEGTLSG KQDILDRTLI RSPVNGIVKT LYITTIGGVA SPGKSVIDIV PTNDSLLIEA
RIQPQDIAYI RVGDDAKVRI TAFDSGALGS LDAKVELISP DSQADERSGS LYYKVQVRTH
SSVVATQVGD LNILPGMVAE VDVITGRRTI MSYILRPIVR GMSRAMSER
|
|---|
| |