Gene BURPS1106A_1568 details

Gene Information

• Locus tag: BURPS1106A_1568
• ID: 4903235
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1106a
• Kingdom: Bacteria
• Replicon accession: NC_009076
• Strand: -
• Start bp: 1523917
• End bp: 1527264
• Gene Length: 3348 bp
• Protein Length: 1115 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 640134798
• Product: glycosy hydrolase family protein
• Protein accession: YP_001065839
• Protein GI: 126454507
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGCATGCGT GGCCGCCGCT GTTCGAGCGC GTCGCCGCAT GGGGCTTCGA TCATGTGCTG 
ATCGGCGGCC TCTGGGCGGC GAGCCGCCGC GGCTATCCGC GCCACGTCGC GGACCCCGAT 
CGCCCCGCCG AATCGTTCGC GACGTCGCTC GACGCGACGA GCGCGCTCGC CCGCCTGTCG 
GACAGCGCGC GCGAGCACGG GCTGCGCATC GCCGTCGAAG TCGTCGTCGA CCGCGTCGCG 
CGCGAGCACC CGCTGCACGA CGCGCACCGC GACTGGTACG TCGTCGACGA ACGCGACGAC 
GCGCTGATCG ATCCGCGCAC CGCGGCGCTC GCGCACGACG TCGCGCATGC GAACGTCGGC 
AGCGCGGCCG CGCTCGACGC GCTCGCCGAC TGGTGGCGCG CCCGGCTCGG CGCGCTGGCC 
GACGCGGGCG CGGCGGCCTT TCTCGTCGAC GCGCCGCAGC GGATGCCGGC GCACTGGTGG 
GCCGCGCTGC TCCGCGCGCT GCGGCAGGCC CGCGCGGATC TGCCGGTGAT CGCCGGCGTG 
CCGGGCCGGG AGCGCGAGGC GCTCGCGCAG CTCGCCTGCG CCGGCTTCGA CGCGGCGTTC 
TCGTCGCTGC GCTGGTGGGA CCTGCGCGCG CCGTGGTTCG TCGAAGAACA CCGGCTGCTG 
CGGCGCGTCG GCGCGCCGAT CGCGTTCCCG GACGCGTTCG ACGGCCCGCG GCTCGCGCAC 
GATTGGCGGC AGGCCGCGCC CGAGACGATC GAGCGCGCGC ATCGCCGCGC GCTGTGGACC 
GCCGCCGCGC TCGGCACCGG CTGGCTCGTG CCGATGGGCT TCGAGCGCGG CGTGGCCGTC 
GAACTGATGG CGCGCGAGCC GCGAGCCGAC GCGTACCGCG CCGCGCTCGA CAGCGCGCCG 
TTCGACTTGT CGGGCGCGAT CGCCGAAGCG AACGCGCTGC GCCGCGCGGC GCCCGCGCTG 
CGCGGCAACG GCGAGATCGC GCAGCTGACG GGTGCCGATG CGCCGGCGAC CGTGCTGCTG 
CGCGGCGCGC GCACCGCGCT CGAATACGAC GACGAGGCCG CGCTGATCGC GGTCAATCCG 
GACCTCGCGC ACCCCGCGGC GATCGTGCCG TGCGCGGCGC TCGCCGGCGT GCCGGGCGGC 
TTCACGCGCT TCGCGCCGTT CGCCGACGGC CGCCGCCCGC GTATGGGCGC GCTCGAACCG 
TTCGCGCTCG CCGCCGGTGC CTGCACGTTG CTGCGCGCGC AGCGCGCGCG CCCGGTCACG 
ACGGCCCCCG CCGAGGATCG GCGCGGCAAT CGGCCCGGCA CCCGTGCGTC GGTCACGGCC 
GCGCTCGCCG GCGAGCGCAT CGCGATCGAG CGCATCGAGC CCGTCGTCGA CGATGGCCGC 
TTCGCCGTCA AGCGCGTGAT CGGCGAGCGG CTCGCCGTGC GCGCGGCGAT TTTCGCCGAC 
GGTCACGCAC GCCTCGCGGC GGCCGTCCAA TGGCGCGCCG CGGACGAGAA CGGCTGGCAC 
GAGGCCCGAT GCGCCGCCGA AGGCAACGAT GCGTGGCGAG CGGACATTCC GCTCGAACGG 
CTCGGCCGGC ATCTGTTCCG CGTGATCGCG TGGCGCGACG ATTGGGCGAC GCTCGTCGAC 
GAGATCGGCA AGAAGCACGC GGCGGGTCAG GCGGTGGCGC TCGAGCTGGA AGAAGCGCGG 
CGACTCGCCG CCGACGTGCT CGCGCGCGCG CCGGAGGCGA ACCCCGCCGC GCTCGCCGTG 
CTGCGCGAAT TCGCGGCGGC CCTCGACGCC GCGCCGCCCG ACCAGCGGCT CGCGCTGATC 
GGCGCGCCGC ACGTCGCCGA CGCGTTCGCG GCGCTGCGCG AGCGAGCGTT CGCCACGCGC 
GACGCGCCCG TCTTCCCGGT CGACGTCGAG CGGCGCGCGG CCCGCTTCGC CAGCTGGTAC 
GAGATGTTTC CCCGCTCGGC GAGCGACGAT GTCCGCCGCC ACGGCACGTT CGACGACGTC 
GTCGCGCATC TGCCGCGCAT CCGCGACATG GGCTTCGACG TGCTGTACTT CCCGCCGATC 
CATCCGATCG GCACGACCGC GCGCAAGGGC CGCAACAACA GCCTGCAGGC CGCGCCCGAC 
GACGTCGGCA GCCCGTATGC GATCGGCTCG CCGGCGGGCG GCCACACCGC CGTCCATCCG 
CAGCTCGGCT CGCTCGATGC GTTCCGCCGG CTCGTCGCTG CGGCGCGCGC GCACGATCTC 
GAGATCGCGC TCGACTTCGC GGTTCAATGC TCGCCGGACC ATCCGTGGCT CACCGAGCAT 
CCCGGCTGGT TCGCATGGCG GCCGGACGGC TCGCTGCGCT ACGCGGAAAA TCCGCCGAAG 
CGCTATCAGG ACATCGTGAA TCCCGACTTC TACGCGCGCG ACGCGATGCC CGCGCTGTGG 
ATCGCGCTGC GCGACGTCGT GCTGTTCTGG ATCGACGCGG GCGTGCGCAT CTTCCGCGTC 
GACAATCCGC ACACGAAGCC GCTGCCGTTC TGGGCATGGA TGATCGCCGA CGTGCGCGCG 
CGACACCCGG ACACGGTGTT CCTGTCCGAG GCGTTCACGC GGCCGAGCAT GATGTACCGG 
CTCGCGAAGC TCGGCTTCTC GCAGTCGTAT ACCTACTTCA CGTGGCGCGA GTCGAAGCGC 
GAGTTCATCG ATTATCTGAC CGAGCTCGCC GACGGGCCGG CGCGCGAATA CTTCCGGCCG 
AACTTCTTCG TCAACACGCC GGACATCAAT CCGCGCCACC TGCAGCAGGC GCCGCGCACG 
CAGTTCGTGA TCCGCGCGGC GCTCGCCGCG ACGCTCTCGG GCCTCTGGGG AATGTATTCG 
GGCTTCGAGC TGTGCGAGTC CGACGCGCTG CCCGACAGCG AGGAATATCG CGACGCGGAG 
AAATACGAGC TGCGCGCGCG CGACTGGCGG CGGCCCGGCC ACATCGGCGA CGAAATCGCG 
CGGCTCAACC GCGCGCGGCG CGACAACCCG GCGCTGCAGA CGCATCTCGG CATCCGCTTC 
GCGCACGCGC CGAACGACGC GGTGCTGGTG TTCTCGAAGG CGACGCCCGC GCACGACAAC 
GTCGTCGTCG TCGCGATCAG CCTCGATCCG TGGCATCCGC AGGCCACCGA TTTCACGCTC 
GACGCGGCGC TGTACCGCGG CTGGGGCATC GCCGACGGCG AGCGGCTCGT CGCCGTCGAT 
CAGACGGCCG ACCACGTCGA AACCTGGCAC GGGCGCCGGC ATTACGTCGC GCTCGACCCG 
CACGTGCGCC CGTTCGCGAT CTGGCGCGTC GCGCCCGCGG CGGGCGTCGC GCGCGGCGCT 
CGCGACGACG CGCGCGACGT CCCCGCACAG GAGGTGCACG AACGATGA 

 

Protein sequence

MHAWPPLFER VAAWGFDHVL IGGLWAASRR GYPRHVADPD RPAESFATSL DATSALARLS 
DSAREHGLRI AVEVVVDRVA REHPLHDAHR DWYVVDERDD ALIDPRTAAL AHDVAHANVG 
SAAALDALAD WWRARLGALA DAGAAAFLVD APQRMPAHWW AALLRALRQA RADLPVIAGV 
PGREREALAQ LACAGFDAAF SSLRWWDLRA PWFVEEHRLL RRVGAPIAFP DAFDGPRLAH 
DWRQAAPETI ERAHRRALWT AAALGTGWLV PMGFERGVAV ELMAREPRAD AYRAALDSAP 
FDLSGAIAEA NALRRAAPAL RGNGEIAQLT GADAPATVLL RGARTALEYD DEAALIAVNP 
DLAHPAAIVP CAALAGVPGG FTRFAPFADG RRPRMGALEP FALAAGACTL LRAQRARPVT 
TAPAEDRRGN RPGTRASVTA ALAGERIAIE RIEPVVDDGR FAVKRVIGER LAVRAAIFAD 
GHARLAAAVQ WRAADENGWH EARCAAEGND AWRADIPLER LGRHLFRVIA WRDDWATLVD 
EIGKKHAAGQ AVALELEEAR RLAADVLARA PEANPAALAV LREFAAALDA APPDQRLALI 
GAPHVADAFA ALRERAFATR DAPVFPVDVE RRAARFASWY EMFPRSASDD VRRHGTFDDV 
VAHLPRIRDM GFDVLYFPPI HPIGTTARKG RNNSLQAAPD DVGSPYAIGS PAGGHTAVHP 
QLGSLDAFRR LVAAARAHDL EIALDFAVQC SPDHPWLTEH PGWFAWRPDG SLRYAENPPK 
RYQDIVNPDF YARDAMPALW IALRDVVLFW IDAGVRIFRV DNPHTKPLPF WAWMIADVRA 
RHPDTVFLSE AFTRPSMMYR LAKLGFSQSY TYFTWRESKR EFIDYLTELA DGPAREYFRP 
NFFVNTPDIN PRHLQQAPRT QFVIRAALAA TLSGLWGMYS GFELCESDAL PDSEEYRDAE 
KYELRARDWR RPGHIGDEIA RLNRARRDNP ALQTHLGIRF AHAPNDAVLV FSKATPAHDN 
VVVVAISLDP WHPQATDFTL DAALYRGWGI ADGERLVAVD QTADHVETWH GRRHYVALDP 
HVRPFAIWRV APAAGVARGA RDDARDVPAQ EVHER