| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_1492 |
|---|
| Symbol | |
|---|
| ID | 4902298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009076 |
|---|
| Strand | - |
|---|
| Start bp | 1448522 |
|---|
| End bp | 1450126 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640134723 |
|---|
| Product | putative proline/betaine transporter |
|---|
| Protein accession | YP_001065766 |
|---|
| Protein GI | 126452173 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCCTT TCACGCTCGC GACCGACCCT CGTCCGATCG CGAGCGGCAC TCCCGGCAAA
CCGTGGCGAA CCGCGCCCCG TCGCGCGGTT CGGCCGCCGT CACAGGAGTT TTCGACCTTG
ACTGCAACAC CCGCCCCCTC CAGTTCGTCC AGCGCGCCCA CCGAAGGCGC GCTTCCCGCC
GCTGCGCACG AGATCACCGT CGTCGATCAG GGCCTGCTCA AGCGCGCCGT CGGCGCGATG
GCGCTCGGCA ACGCGATGGA ATGGTTCGAC TTCGGCGTCT ACAGCTACAT CGCCGTCACG
CTCGGCCAGG TGTTCTTCCC GTCGAGCAGC CCGTCCGCGC AGTTGCTCGC GACGTTCGGC
ACGTTCGCCG CCGCCTTCCT CGTGCGCCCG CTCGGCGGGA TGGTGTTCGG GCCGCTCGGC
GATCGCATCG GCCGCCAGCG CGTGCTCGCG ATGACGATGA TCATGATGGC GGTCGGCACG
TTCGCGATCG GCCTGATCCC GAGCTACGAC TCGATCGGCC TCCTCGCGCC CGTGCTGCTC
CTCGTCGCGC GTCTCGTGCA AGGCTTCTCG ACGGGCGGCG AGTACGGCGG CGCGGCAACC
TTCATCGCCG AGTTCTCGAC CGACAAGCGC CGCGGCTTCA TGGGCAGCTT CCTCGAGTTC
GGCACGCTGA TCGGCTATGT GATGGGCGCG GGCGTCGTCG CGCTGCTGAC GGCTTCGCTG
TCGCACGACG CGCTGCTGTC GTGGGGCTGG CGCGTGCCGT TCCTGATCGC CGGCCCGCTC
GGCCTGATCG GCCTGTACAT CCGGATGAGG CTCGAGGAAA CGCCCGCGTT CAAGCGGCAG
GCCGAAGCGC GCGAAGCGCA GGACAAGGCC GTGCCGAAGG CGCATTTCCG CCGACAGCTC
GCGCGGCACT GGCGCGCGCT GCTGCTGTGC GTCGGCCTCG TGCTGATCTT CAACGTCACC
GATTACATGG CGCTGTCGTA CCTGCCGAGC TATCTGTCGT CGACGCTGCA CTTCGACGAG
GCGCACGGCC TCGTGCTGAT CCTGATCGTG ATGGTGCTGA TGATGCCGAT GACGCTCGCC
ACGGGCCGCC TGTCGGACGC CGTCGGCCGC AAGCCGGTGA TGCTCGCCGG CTGCGTCGGG
CTCTTCGCGC TCGCGATTCC CGCGCTGCTC CTGATCCGCA CCGGCGAGAC GGCGCTCGTG
TTCGGCGGCC TGCTGATCCT CGGCGCACTG CTGTCGTGCT TCACGGGCGT GATGCCGTCG
GCGCTGCCCG CGCTCTTTCC GACCGAGATC CGCTACGGCG CGCTCGCGAT CGGCTTCAAC
GTGTCGGTGT CGCTGTTCGG CGGCACGACG CCGCTCGCCG CCGCGTGGCT CGTCGACGCG
ACGGGCAACC TGATGATGCC CGCGTACTAC CTGATGGGCG CGGCCGTGAT CGGCGCGATC
TCGGTGCTCG CGCTGCCCGA GAGCGCGCGC CAGCCGCTCA AGGGCTCGCC GCCCGCCGTC
GCGTCGCACC GCGAGGCACA CGCGCTCGCG CGCGAGATCA AGCGCCGCGA GGCGGCCGAG
CGCGACGACA GCGGCTACCC GTCGGCCGCG GCGTTGCGCG CGTGA
|
|---|
| Protein sequence | MRPFTLATDP RPIASGTPGK PWRTAPRRAV RPPSQEFSTL TATPAPSSSS SAPTEGALPA
AAHEITVVDQ GLLKRAVGAM ALGNAMEWFD FGVYSYIAVT LGQVFFPSSS PSAQLLATFG
TFAAAFLVRP LGGMVFGPLG DRIGRQRVLA MTMIMMAVGT FAIGLIPSYD SIGLLAPVLL
LVARLVQGFS TGGEYGGAAT FIAEFSTDKR RGFMGSFLEF GTLIGYVMGA GVVALLTASL
SHDALLSWGW RVPFLIAGPL GLIGLYIRMR LEETPAFKRQ AEAREAQDKA VPKAHFRRQL
ARHWRALLLC VGLVLIFNVT DYMALSYLPS YLSSTLHFDE AHGLVLILIV MVLMMPMTLA
TGRLSDAVGR KPVMLAGCVG LFALAIPALL LIRTGETALV FGGLLILGAL LSCFTGVMPS
ALPALFPTEI RYGALAIGFN VSVSLFGGTT PLAAAWLVDA TGNLMMPAYY LMGAAVIGAI
SVLALPESAR QPLKGSPPAV ASHREAHALA REIKRREAAE RDDSGYPSAA ALRA
|
|---|
| |