Gene BURPS1106A_1367 details

Gene Information

• Locus tag: BURPS1106A_1367
• Symbol: mdtC
• ID: 4899621
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1106a
• Kingdom: Bacteria
• Replicon accession: NC_009076
• Strand: -
• Start bp: 1336700
• End bp: 1340002
• Gene Length: 3303 bp
• Protein Length: 1100 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 640134597
• Product: multidrug resistance protein MdtC
• Protein accession: YP_001065640
• Protein GI: 126451634
• COG category: [V] Defense mechanisms
• COG ID: [COG0841] Cation/multidrug efflux pump
• TIGRFAM ID: [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACCTGG CCCGCCCGTT CATCACCCGC CCCGTCGCGA CGACGCTGCT CGCGCTCGGC 
ATCGCGCTCG CCGGCCTGTT CGCGTTCGTC AAGCTGCCCG TCTCGCCGCT GCCGCAGGTC 
GATTTTCCGA CGATCCTCGT GCAGGCGTCG CTGCCCGGCG CGAGCCCGGA GACCGTCGCG 
ACCAGCGTGA CGAGCCCGCT CGAGCGGCAT CTGGGCTCGA TCGCGGACGT CGCCGAGATG 
ACGTCGATGA GCTCGGTCGG CAACGCGCGG ATCGTGCTGC AGTTCAACCT GAACCGCGAC 
ATCGACGGCG CCGCGCGCGA CGTGCAGGCC GCGATCAACG CCGCGCGCGC GGATCTGCCC 
GCGAGCCTGA AGAGCAACCC GACGTACCGC AAGGTCAACC CGGCCGATTC GCCGATCATG 
GTCGTGTCGC TCACGTCGAA GACGGCTTCG CCCGCGAAGC TGTACGACGC CGCGTCGACG 
GTGCTGCAGC AGTCGCTATC GCAGATCGAC GGCATCGGCC AGGTCAGCCT GAGCGGCTCG 
GCGAACCCGG CCGTGCGCGT CGAGCTCGAA CCGCAGGCGC TGTTCCATTA CGGCATCGGC 
CTTGAGGACG TGCGCGCGGC GCTCGCGTCG GCGAACGCGA ACAGCCCGAA GGGCGCGATC 
GAAGCCGGCC CGCACCGCTA CCAGTTGTAC ACGAACGATC AGGCGACGAA GGCCGCGCAA 
TACAAGGATC TCGTGATCGC GTACCGCAAC CACGCGGCGG TGAGCCTGTC CGACGTGTCG 
AGCGTCGTCG ATTCGGTCGA GGACCTGCGC AACCTCGGCC TCATGAACGG CGAGCGCGCG 
GTGCTCGTGA TCCTGTACCG CTCGCCCGGC GCGAACATCA TCGACACGAT CGAGCGCGTG 
AAGGCCGCGC TGCCGCAACT GACGGCCGCG CTGCCCGCCG ACATCCAGGT CACGCCGGTG 
CTCGACCGCT CGCGCACGAT CCGCGCGTCG CTCGCCGACA CCGAGCACAC GCTCATCATC 
GCGGTGAGCC TCGTCGTGAT GGTCGTGTTC CTGTTCCTGC GCAACTGGCG CGCGACGCTG 
ATTCCGAGCG TCGCGGTGCC GATCTCGATC GTCGGCACGT TCGGCGCGAT GTATCTGCTC 
GGCTTCTCGC TGAACAACCT GTCGCTGATG GCGCTCATCG TCGCGACGGG CTTCGTCGTC 
GACGACGCGA TCGTCGTGCT CGAGAACATC GCGCGCCACA TCGAGAACGG CACGCCGCGG 
CTGCAGGCCG CGTTCGACGG CGCGCGCGAG GTCGGCTTCA CGGTGCTGTC GATCAGCCTG 
TCGCTCGTCG CGGTGTTTCT GCCGATCCTG CTGATGGGCG GCATCGTCGG GCGCCTGTTC 
CGCGAATTCG CGCTCACGCT GTCGCTCGCG ATCGCCGTGT CGCTCGTCGT GTCGCTCACG 
CTCACGCCGA TGATGTGCGC GCGCCTGCTG CCCGAAGCCC ACGCGCCGCG CGACGAGGGC 
CGCGTCGCGC GCTGGCTCGA GCGCGGCTTC GAATGGATGC AGCGCGGCTA CGAGCGCACG 
CTGTCGTGGG CGCTGCGCCA TCCGTTCACG ATCCTGATGA CGCTCGTCGC GACGATCGCG 
CTGAACATCG CGCTGTACAT CGTCGTGCCG AAGGGCTTCT TCCCGCAGCA GGACACGGGC 
CTCATGATCG GCGGCATCCA GGCCGACCAG ACGACGTCGT TCCAGGCGAT GAAGCTCAGG 
TTCACCGAGA TGATGCGCAT CATCCGCGCG AATCCGAACG TCGCGAACGT CGCGGGCTTC 
ACGGGCGGCG CGCAGACGAA CTCGGGCTTC ATGTTCGTCG CGCTGAAGGA CAAGCCGCAG 
CGCAAGCTCT CGGCCGATCA GGTGATCCAG CAACTGCGGC CGCAGCTCGC CGAGGTCGCG 
GGCGCGCGCA CGTTCCTGCA AGCCGCGCAG GACATCCGCG CGGGCGGCCG GCAGAGCAAC 
GCGCAGTATC AGTTCACGCT GCTCGGCGAT TCGACGGCCG AGCTGTACAA GTGGGGGCCG 
ATCCTCACGG AGGCGCTGCA AAAGCGCCCC GAGCTCGCCG ACGTGAATTC CGACCAGCAG 
CAAGGCGGCC TCGAGGCGAT GGTGACGATC GACCGCGCGA CGGCCGCGCG CCTCGGCATC 
AAGCCCGCGC AGATCGACAA CACGCTGTAC GACGCGTTCG GCCAGCGCCA GGTCTCGACG 
ATCTACAACC CGCTCAACCA GTACCACGTC GTGATGGAGG TCGCGCCGCA GTACTGGCAG 
AGCCCGGAGA TGCTCAAGCA GATCTACATC AGCACGTCGG GCGGCAGCGC GAGCGGCGTG 
CAGACGACGA ACGCGGCGGC GGGCACCTAC GTGGCGACCA CGGCGCGCGC GTCGACGGCC 
GGCGCGGCCG CGCAGAGCGC CGCGGCGATC GCCGCCGATT CGGCGCGCAA CCAGGCGCTC 
AACTCGATCG CGTCGAGCGG CAAGTCGAGC GCGTCGTCGG GCGCGGCGGT GTCGACGTCG 
AAATCGACGA TGGTGCCGCT CTCCGCGATC GCGAGCTTCG GGCCGAGCAC GACGCCGCTC 
GCGGTCAACC ACCAGGGCCT GTTCGTCGCG ACGACGATCT CGTTCAACCT GCCGCCCGGC 
GTGTCGCTGT CGAAGGCGAC GCAGGTGATC TACCAGACGA TGGCCGAAGT CGGCGTGCCG 
CCGACGATCC AGGGCAGCTT CCAGGGCACC GCGCAGGCGT TCCAGGAATC GCTGAAGGAT 
CAGCCGATCC TGATCCTCGC CGCGCTCGCG GCCGTCTACA TCGTGCTCGG GATCCTGTAC 
GAGAGCTACA TCCATCCGGT GACGATCCTG TCGACGCTGC CGTCGGCGGG CGTCGGCGCG 
CTGCTCGGCC TGCTGCTCTT CAAGACCGAG TTCAGCATCA TCGCGCTGAT CGGCGTGATC 
CTGCTCATCG GCATCGTGAA GAAGAACGCG ATCATGATGG TCGACTTCGC GATCGACGCG 
TCGCGGCAGG GCAAGTCTTC GTTCGACGCG ATCCACGAAG CATGCCTGCT GCGCTTCCGG 
CCGATCATGA TGACGACGAT GGCGGCGCTC CTCGGCGCGC TGCCGCTCGC GTTCGGCCGC 
GGCGACGGCG CCGAGATGCG CGCGCCGCTC GGGATCGCGA TCGCGGGCGG GCTCATCGTG 
TCGCAGATGC TCACGCTCTA TACGACGCCC GTCGTCTATC TGTACATGGA CCGGCTGCGC 
GTGTGGGCCG AGAAGCGCCG CGACCGCCGC TCATCGGGCG GCGCGGCGAT CGCGGGCGAG 
TGA 

 

Protein sequence

MNLARPFITR PVATTLLALG IALAGLFAFV KLPVSPLPQV DFPTILVQAS LPGASPETVA 
TSVTSPLERH LGSIADVAEM TSMSSVGNAR IVLQFNLNRD IDGAARDVQA AINAARADLP 
ASLKSNPTYR KVNPADSPIM VVSLTSKTAS PAKLYDAAST VLQQSLSQID GIGQVSLSGS 
ANPAVRVELE PQALFHYGIG LEDVRAALAS ANANSPKGAI EAGPHRYQLY TNDQATKAAQ 
YKDLVIAYRN HAAVSLSDVS SVVDSVEDLR NLGLMNGERA VLVILYRSPG ANIIDTIERV 
KAALPQLTAA LPADIQVTPV LDRSRTIRAS LADTEHTLII AVSLVVMVVF LFLRNWRATL 
IPSVAVPISI VGTFGAMYLL GFSLNNLSLM ALIVATGFVV DDAIVVLENI ARHIENGTPR 
LQAAFDGARE VGFTVLSISL SLVAVFLPIL LMGGIVGRLF REFALTLSLA IAVSLVVSLT 
LTPMMCARLL PEAHAPRDEG RVARWLERGF EWMQRGYERT LSWALRHPFT ILMTLVATIA 
LNIALYIVVP KGFFPQQDTG LMIGGIQADQ TTSFQAMKLR FTEMMRIIRA NPNVANVAGF 
TGGAQTNSGF MFVALKDKPQ RKLSADQVIQ QLRPQLAEVA GARTFLQAAQ DIRAGGRQSN 
AQYQFTLLGD STAELYKWGP ILTEALQKRP ELADVNSDQQ QGGLEAMVTI DRATAARLGI 
KPAQIDNTLY DAFGQRQVST IYNPLNQYHV VMEVAPQYWQ SPEMLKQIYI STSGGSASGV 
QTTNAAAGTY VATTARASTA GAAAQSAAAI AADSARNQAL NSIASSGKSS ASSGAAVSTS 
KSTMVPLSAI ASFGPSTTPL AVNHQGLFVA TTISFNLPPG VSLSKATQVI YQTMAEVGVP 
PTIQGSFQGT AQAFQESLKD QPILILAALA AVYIVLGILY ESYIHPVTIL STLPSAGVGA 
LLGLLLFKTE FSIIALIGVI LLIGIVKKNA IMMVDFAIDA SRQGKSSFDA IHEACLLRFR 
PIMMTTMAAL LGALPLAFGR GDGAEMRAPL GIAIAGGLIV SQMLTLYTTP VVYLYMDRLR 
VWAEKRRDRR SSGGAAIAGE